RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ZBTB17Q13105 803 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 CALCOCO2Q13137 446 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 CCDC50Q8IVM0 306 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 RNF214Q8ND24 703 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 PPP1R12AO14974 1030 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 MGEA5O60502 916 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 CA8P35219 290 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 SMC1BQ8NDV3 1235 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 SMC3Q9UQE7 1217 aa8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 MRPL46Q9H2W6 279 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-201ENST00000313860 CASQ2O14958 399 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 RINLQ6ZS11 566 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 TXLNAP40222 546 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 STK3Q13188 491 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 PDCD2Q16342 344 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 CCDC170Q8IYT3 715 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 SMIM24O75264 130 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 ARL1P40616 181 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 MIER3Q7Z3K6 550 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 MAATS1Q7Z4T9 603 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 HYPKQ9NX55 129 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 TBC1D10BQ4KMP7 808 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 SH2D4BQ5SQS7 431 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 DDX41Q9UJV9 622 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 GFAPP14136 432 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 ODF2LQ9ULJ1 636 aa8.97□□□□□ -0.97
LIMCH1-201ENST00000313860 MBD3O95983 291 aa8.96□□□□□ -0.97
LIMCH1-201ENST00000313860 CCDC73Q6ZRK6 1079 aa8.96□□□□□ -0.97
LIMCH1-201ENST00000313860 IFFO1Q0D2I5 559 aa8.96□□□□□ -0.97
LIMCH1-201ENST00000313860 CCDC129Q6ZRS4 1044 aa8.96□□□□□ -0.97
LIMCH1-201ENST00000313860 ATXN8OSP0DMR3 200 aa8.96□□□□□ -0.98
LIMCH1-201ENST00000313860 MSL1Q68DK7 614 aa8.96□□□□□ -0.98
LIMCH1-201ENST00000313860 IL27Q8NEV9 243 aa8.96□□□□□ -0.98
LIMCH1-201ENST00000313860 MCM6Q14566 821 aa8.96□□□□□ -0.98
LIMCH1-201ENST00000313860 RALYLQ86SE5 291 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-201ENST00000313860 HMGB1P1B2RPK0 211 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 KIF5BP33176 963 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 GNL1P36915 607 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 IQCEQ6IPM2 695 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 USP6NLQ92738 828 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 VPS37CA5D8V6 355 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 SERPINI2O75830 405 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 LIG1P18858 919 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 MAP7D1Q3KQU3 841 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 SYNE3Q6ZMZ3 975 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 FMNL2Q96PY5 1086 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 TRIM5Q9C035 493 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 SH3BP5O60239 455 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 NBPF8Q3BBV2 869 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 RSPH3Q86UC2 560 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 HIP1RO75146 1068 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 TACC1O75410 805 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 ATP6V1E1P36543 226 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 FLOT2Q14254 428 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 CRACR2AQ9BSW2 395 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 EPB41L2O43491 1005 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 MKRN1Q9UHC7 482 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 ATP6V1DQ9Y5K8 247 aa8.95□□□□□ -0.98
LIMCH1-201ENST00000313860 PPP1R12BO60237 982 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 PPFIA2O75334 1257 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 MRPS9P82933 396 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 CHIC2Q9UKJ5 165 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 SHQ1Q6PI26 577 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 MICALL1Q8N3F8 863 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 POTEB3A0JP26 581 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 INPP1P49441 399 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 POTEBQ6S5H4 581 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 SOX12O15370 315 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 HSPA4P34932 840 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 INF2Q27J81 1249 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 WDR63Q8IWG1 891 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 EPSTI1Q96J88 318 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 MAK16Q9BXY0 300 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 MAGEC2Q9UBF1 373 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 CEBPZQ03701 1054 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 TSC22D1Q15714 1073 aa8.94□□□□□ -0.98
LIMCH1-201ENST00000313860 GSTTP1A0A1W2PQM5 241 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 NOP56O00567 594 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 ATP6V1AP38606 617 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 CC2D2BQ6DHV5 1058 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 LUZP1Q86V48 1076 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 UBAP1Q9NZ09 502 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 RAI14Q9P0K7 980 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 PAIP2BQ9ULR5 123 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 LRCH2Q5VUJ6 765 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 BRPF3Q9ULD4 1205 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 GSDMBQ8TAX9 411 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 PPP1R12CQ9BZL4 782 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 BUB1BO60566 1050 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 OPTNQ96CV9 577 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 NUCKS1Q9H1E3 243 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 TSPY26PQ9H489 355 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 PABPN1LA6NDY0 278 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 SPECC1LQ69YQ0 1117 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 MRFAP1Q9Y605 127 aa8.93□□□□□ -0.98
LIMCH1-201ENST00000313860 CTAGE9A4FU28 777 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 LMAN1P49257 510 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 FAM160A1Q05DH4 1040 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 GBP6Q6ZN66 633 aa8.92□□□□□ -0.98
LIMCH1-201ENST00000313860 CCDC148Q8NFR7 591 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms