RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 WNK3Q9BYP7 1800 aa22.87■■□□□ 1.25
LSM1-201ENST00000311351 SLC24A1O60721 1099 aa22.87■■□□□ 1.25
LSM1-201ENST00000311351 ARHGEF25Q86VW2 580 aa22.87■■□□□ 1.25
LSM1-201ENST00000311351 OVOS2A0A0J9YW53 1432 aa22.87■■□□□ 1.25
LSM1-201ENST00000311351 OVOS2Q6IE36 1432 aa22.87■■□□□ 1.25
LSM1-201ENST00000311351 CRB1P82279 1406 aa22.86■■□□□ 1.25
LSM1-201ENST00000311351 FAM182BQ5T319 152 aa22.86■■□□□ 1.25
LSM1-201ENST00000311351 AXIN2Q9Y2T1 843 aa22.86■■□□□ 1.25
LSM1-201ENST00000311351 ANKRD36BQ8N2N9 1353 aa22.85■■□□□ 1.25
LSM1-201ENST00000311351 PARP4Q9UKK3 1724 aaKnown RBP22.85■■□□□ 1.25
LSM1-201ENST00000311351 ABCC6O95255 1503 aa22.84■■□□□ 1.25
LSM1-201ENST00000311351 TCP11L2Q8N4U5 519 aa22.84■■□□□ 1.25
LSM1-201ENST00000311351 BARGINQ6ZT62 677 aa22.83■■□□□ 1.25
LSM1-201ENST00000311351 CCDC125Q86Z20 511 aa22.83■■□□□ 1.25
LSM1-201ENST00000311351 RGPD1P0DJD0 1748 aa22.82■■□□□ 1.24
LSM1-201ENST00000311351 LRRC37A3O60309 1634 aa22.82■■□□□ 1.24
LSM1-201ENST00000311351 TNS1Q9HBL0 1735 aaKnown RBP22.81■■□□□ 1.24
LSM1-201ENST00000311351 WDR17Q8IZU2 1322 aa22.81■■□□□ 1.24
LSM1-201ENST00000311351 KIF20BQ96Q89 1820 aa22.8■■□□□ 1.24
LSM1-201ENST00000311351 TOM1L2Q6ZVM7 507 aa22.79■■□□□ 1.24
LSM1-201ENST00000311351 DEFB132Q7Z7B7 95 aa22.78■■□□□ 1.24
LSM1-201ENST00000311351 THRAP3Q9Y2W1 955 aaKnown RBP22.78■■□□□ 1.24
LSM1-201ENST00000311351 CDCA8Q53HL2 280 aa22.77■■□□□ 1.24
LSM1-201ENST00000311351 SF3B2Q13435 895 aaKnown RBP22.76■■□□□ 1.23
LSM1-201ENST00000311351 CSB-PGBD3P0DP91 1061 aa22.75■■□□□ 1.23
LSM1-201ENST00000311351 HSPA5P11021 654 aaKnown RBP22.74■■□□□ 1.23
LSM1-201ENST00000311351 PDE3BQ13370 1112 aa22.73■■□□□ 1.23
LSM1-201ENST00000311351 COG3Q96JB2 828 aa22.73■■□□□ 1.23
LSM1-201ENST00000311351 PEAK1Q9H792 1746 aa22.72■■□□□ 1.23
LSM1-201ENST00000311351 ERBB3P21860 1342 aa22.72■■□□□ 1.23
LSM1-201ENST00000311351 EIF4G2P78344 907 aaKnown RBP eCLIP22.71■■□□□ 1.23
LSM1-201ENST00000311351 DISP2A7MBM2 1401 aa22.71■■□□□ 1.23
LSM1-201ENST00000311351 FBLN1P23142 703 aa22.7■■□□□ 1.22
LSM1-201ENST00000311351 POLR3GLQ9BT43 218 aa22.7■■□□□ 1.22
LSM1-201ENST00000311351 CARD10Q9BWT7 1032 aa22.7■■□□□ 1.22
LSM1-201ENST00000311351 GGNBP2Q9H3C7 697 aa22.7■■□□□ 1.22
LSM1-201ENST00000311351 NSD3Q9BZ95 1437 aa22.7■■□□□ 1.22
LSM1-201ENST00000311351 FYB1O15117 783 aa22.69■■□□□ 1.22
LSM1-201ENST00000311351 FAM196AQ6ZSG2 479 aa22.69■■□□□ 1.22
LSM1-201ENST00000311351 FAM208AQ9UK61 1670 aaKnown RBP22.68■■□□□ 1.22
LSM1-201ENST00000311351 CCDC7Q96M83 1385 aa22.68■■□□□ 1.22
LSM1-201ENST00000311351 TRIM37O94972 964 aa22.68■■□□□ 1.22
LSM1-201ENST00000311351 BAG6P46379 1132 aa22.68■■□□□ 1.22
LSM1-201ENST00000311351 CARD14Q9BXL6 1004 aa22.68■■□□□ 1.22
LSM1-201ENST00000311351 MAP3K19Q56UN5 1328 aa22.67■■□□□ 1.22
LSM1-201ENST00000311351 SBF2Q86WG5 1849 aa22.67■■□□□ 1.22
LSM1-201ENST00000311351 PIAS4Q8N2W9 510 aaPredicted RBP22.67■■□□□ 1.22
LSM1-201ENST00000311351 ANKRD24Q8TF21 1146 aa22.67■■□□□ 1.22
LSM1-201ENST00000311351 OVOS2A0A0G2JMS6 1433 aa22.66■■□□□ 1.22
LSM1-201ENST00000311351 DDB1Q16531 1140 aa22.66■■□□□ 1.22
LSM1-201ENST00000311351 RGPD2P0DJD1 1756 aa22.66■■□□□ 1.22
LSM1-201ENST00000311351 EN1Q05925 392 aaPredicted RBP22.65■■□□□ 1.22
LSM1-201ENST00000311351 NLRP2Q9NX02 1062 aa22.65■■□□□ 1.22
LSM1-201ENST00000311351 IP6K1Q92551 441 aa22.64■■□□□ 1.21
LSM1-201ENST00000311351 TNS2Q63HR2 1409 aa22.64■■□□□ 1.21
LSM1-201ENST00000311351 CDCA7Q9BWT1 371 aaPredicted RBP22.63■■□□□ 1.21
LSM1-201ENST00000311351 HOXC9P31274 260 aa22.62■■□□□ 1.21
LSM1-201ENST00000311351 RRS1Q15050 365 aaKnown RBP22.62■■□□□ 1.21
LSM1-201ENST00000311351 LTV1Q96GA3 475 aaPredicted RBP22.62■■□□□ 1.21
LSM1-201ENST00000311351 RTL1A6NKG5 1358 aa22.62■■□□□ 1.21
LSM1-201ENST00000311351 AMPHP49418 695 aa22.61■■□□□ 1.21
LSM1-201ENST00000311351 ANKRD26Q9UPS8 1709 aa22.6■■□□□ 1.21
LSM1-201ENST00000311351 MARCH10Q8NA82 808 aaPredicted RBP22.6■■□□□ 1.21
LSM1-201ENST00000311351 RREB1Q92766 1687 aa22.6■■□□□ 1.21
LSM1-201ENST00000311351 APBA3O96018 575 aa22.59■■□□□ 1.21
LSM1-201ENST00000311351 EZH2Q15910 746 aaKnown RBP22.58■■□□□ 1.21
LSM1-201ENST00000311351 NUP188Q5SRE5 1749 aa22.57■■□□□ 1.2
LSM1-201ENST00000311351 C11orf95C9JLR9 678 aaPredicted RBP22.57■■□□□ 1.2
LSM1-201ENST00000311351 IL2RBP14784 551 aa22.56■■□□□ 1.2
LSM1-201ENST00000311351 EXOC5O00471 708 aa22.55■■□□□ 1.2
LSM1-201ENST00000311351 CAMKK2Q96RR4 588 aa22.55■■□□□ 1.2
LSM1-201ENST00000311351 CGNL1Q0VF96 1302 aa22.55■■□□□ 1.2
LSM1-201ENST00000311351 PTF1AQ7RTS3 328 aa22.54■■□□□ 1.2
LSM1-201ENST00000311351 BCL9O00512 1426 aa22.54■■□□□ 1.2
LSM1-201ENST00000311351 MAP2P11137 1827 aaKnown RBP22.54■■□□□ 1.2
LSM1-201ENST00000311351 RGPD3A6NKT7 1758 aaPredicted RBP22.53■■□□□ 1.2
LSM1-201ENST00000311351 RGPD4Q7Z3J3 1758 aa22.53■■□□□ 1.2
LSM1-201ENST00000311351 SHANK3Q9BYB0 1731 aa22.53■■□□□ 1.2
LSM1-201ENST00000311351 SRCAPQ6ZRS2 3230 aa22.53■■□□□ 1.2
LSM1-201ENST00000311351 NHSQ6T4R5 1651 aa22.52■■□□□ 1.2
LSM1-201ENST00000311351 FLT4P35916 1363 aa22.52■■□□□ 1.2
LSM1-201ENST00000311351 PARD3Q8TEW0 1356 aa22.52■■□□□ 1.2
LSM1-201ENST00000311351 PSDA5PKW4 1024 aaPredicted RBP22.52■■□□□ 1.2
LSM1-201ENST00000311351 EMILIN1Q9Y6C2 1016 aa22.52■■□□□ 1.2
LSM1-201ENST00000311351 MEGF6O75095 1541 aa22.52■■□□□ 1.19
LSM1-201ENST00000311351 SMG6Q86US8 1419 aaKnown RBP22.51■■□□□ 1.19
LSM1-201ENST00000311351 PANK3Q9H999 370 aa22.51■■□□□ 1.19
LSM1-201ENST00000311351 HSP90AB2PQ58FF8 381 aa22.5■■□□□ 1.19
LSM1-201ENST00000311351 INSRP06213 1382 aa22.5■■□□□ 1.19
LSM1-201ENST00000311351 KIF24Q5T7B8 1368 aa22.5■■□□□ 1.19
LSM1-201ENST00000311351 USHBP1Q8N6Y0 703 aa22.49■■□□□ 1.19
LSM1-201ENST00000311351 KIF7Q2M1P5 1343 aa22.49■■□□□ 1.19
LSM1-201ENST00000311351 NBPF6Q5VWK0 638 aa22.48■■□□□ 1.19
LSM1-201ENST00000311351 NBPF4Q96M43 638 aa22.48■■□□□ 1.19
LSM1-201ENST00000311351 KAT6BQ8WYB5 2073 aa22.47■■□□□ 1.19
LSM1-201ENST00000311351 BCL11BQ9C0K0 894 aaPredicted RBP22.47■■□□□ 1.19
LSM1-201ENST00000311351 BTAF1O14981 1849 aa22.45■■□□□ 1.19
LSM1-201ENST00000311351 PPM1GO15355 546 aaPredicted RBP22.45■■□□□ 1.18
LSM1-201ENST00000311351 TNNT2P45379 298 aaPredicted RBP22.45■■□□□ 1.18
LSM1-201ENST00000311351 R3HDM1Q15032 1099 aaKnown RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms