RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 NEBLO76041 1014 aa18.21■□□□□ 0.51
HCFC1-201ENST00000310441 GAS2L2Q8NHY3 880 aa18.21■□□□□ 0.51
HCFC1-201ENST00000310441 FYB1O15117 783 aa18.21■□□□□ 0.51
HCFC1-201ENST00000310441 FHOD3Q2V2M9 1422 aa18.21■□□□□ 0.51
HCFC1-201ENST00000310441 TAF4BQ92750 862 aa18.21■□□□□ 0.51
HCFC1-201ENST00000310441 CCDC69A6NI79 296 aa18.2■□□□□ 0.5
HCFC1-201ENST00000310441 EPB41L2O43491 1005 aaKnown RBP18.2■□□□□ 0.5
HCFC1-201ENST00000310441 RNF214Q8ND24 703 aa18.2■□□□□ 0.5
HCFC1-201ENST00000310441 GCOM1H8Y6P7 765 aaPredicted RBP18.2■□□□□ 0.5
HCFC1-201ENST00000310441 MYZAPP0CAP1 466 aa18.2■□□□□ 0.5
HCFC1-201ENST00000310441 KIAA1328Q86T90 577 aa18.2■□□□□ 0.5
HCFC1-201ENST00000310441 LRRFIP2Q9Y608 721 aaKnown RBP18.2■□□□□ 0.5
HCFC1-201ENST00000310441 ANKRD18BA2A2Z9 1011 aa18.2■□□□□ 0.5
HCFC1-201ENST00000310441 POLR3GO15318 223 aaPredicted RBP18.19■□□□□ 0.5
HCFC1-201ENST00000310441 GNAI2P04899 355 aa18.19■□□□□ 0.5
HCFC1-201ENST00000310441 MAP2K1Q02750 393 aaPredicted RBP18.19■□□□□ 0.5
HCFC1-201ENST00000310441 KRT32Q14532 448 aa18.19■□□□□ 0.5
HCFC1-201ENST00000310441 NEK4P51957 841 aa18.19■□□□□ 0.5
HCFC1-201ENST00000310441 FMNL2Q96PY5 1086 aa18.19■□□□□ 0.5
HCFC1-201ENST00000310441 TANGO6Q9C0B7 1094 aa18.19■□□□□ 0.5
HCFC1-201ENST00000310441 CCT4P50991 539 aaKnown RBP18.18■□□□□ 0.5
HCFC1-201ENST00000310441 CIZ1Q9ULV3 898 aaPredicted RBP18.18■□□□□ 0.5
HCFC1-201ENST00000310441 FGFR1OPO95684 399 aaKnown RBP18.18■□□□□ 0.5
HCFC1-201ENST00000310441 ZSCAN12O43309 604 aa18.18■□□□□ 0.5
HCFC1-201ENST00000310441 ZNF287Q9HBT7 754 aa18.18■□□□□ 0.5
HCFC1-201ENST00000310441 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.18■□□□□ 0.5
HCFC1-201ENST00000310441 ANAPC15P60006 121 aa18.18■□□□□ 0.5
HCFC1-201ENST00000310441 FIBPO43427 364 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 SOGA3Q5TF21 947 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 LUZP1Q86V48 1076 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 GIGYF2Q6Y7W6 1299 aaKnown RBP18.17■□□□□ 0.5
HCFC1-201ENST00000310441 ARHGAP29Q52LW3 1261 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 TAOK3Q9H2K8 898 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 SMARCA4P51532 1647 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 PLEKHH1Q9ULM0 1364 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 NUTM2FA1L443 756 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 ATF3P18847 181 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 TMCO3Q6UWJ1 677 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 CTNNA3Q9UI47 895 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 TTC39AQ5SRH9 613 aa18.17■□□□□ 0.5
HCFC1-201ENST00000310441 CEP63Q96MT8 703 aa18.16■□□□□ 0.5
HCFC1-201ENST00000310441 GPRASP1Q5JY77 1395 aa18.16■□□□□ 0.5
HCFC1-201ENST00000310441 SPC24Q8NBT2 197 aa18.16■□□□□ 0.5
HCFC1-201ENST00000310441 SAMD1Q6SPF0 538 aaPredicted RBP18.16■□□□□ 0.5
HCFC1-201ENST00000310441 PRPF40AO75400 957 aaKnown RBP18.16■□□□□ 0.5
HCFC1-201ENST00000310441 MINK1Q8N4C8 1332 aaPredicted RBP18.16■□□□□ 0.5
HCFC1-201ENST00000310441 DDX12PQ92771 950 aa18.16■□□□□ 0.5
HCFC1-201ENST00000310441 CCDC102AQ96A19 550 aa18.16■□□□□ 0.5
HCFC1-201ENST00000310441 NECTIN2Q92692 538 aa18.15■□□□□ 0.5
HCFC1-201ENST00000310441 CFAP57Q96MR6 1250 aa18.15■□□□□ 0.5
HCFC1-201ENST00000310441 CCDC83Q8IWF9 413 aa18.15■□□□□ 0.5
HCFC1-201ENST00000310441 POTEB2H3BUK9 544 aa18.15■□□□□ 0.5
HCFC1-201ENST00000310441 NUTM2DQ5VT03 806 aaPredicted RBP18.15■□□□□ 0.5
HCFC1-201ENST00000310441 UQCRHLA0A096LP55 91 aa18.14■□□□□ 0.5
HCFC1-201ENST00000310441 UQCRHP07919 91 aa18.14■□□□□ 0.5
HCFC1-201ENST00000310441 PDE3AQ14432 1141 aa18.14■□□□□ 0.5
HCFC1-201ENST00000310441 UBXN4Q92575 508 aa18.14■□□□□ 0.49
HCFC1-201ENST00000310441 CCDC150Q8NCX0 1101 aa18.14■□□□□ 0.49
HCFC1-201ENST00000310441 ZSCAN31Q96LW9 406 aaPredicted RBP18.14■□□□□ 0.49
HCFC1-201ENST00000310441 GRIPAP1Q4V328 841 aa18.14■□□□□ 0.49
HCFC1-201ENST00000310441 SMC1AQ14683 1233 aaKnown RBP18.14■□□□□ 0.49
HCFC1-201ENST00000310441 TNIP1Q15025 636 aa18.14■□□□□ 0.49
HCFC1-201ENST00000310441 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.49
HCFC1-201ENST00000310441 CCDC97Q96F63 343 aaPredicted RBP18.13■□□□□ 0.49
HCFC1-201ENST00000310441 SPA17Q15506 151 aa18.13■□□□□ 0.49
HCFC1-201ENST00000310441 UPF3BQ9BZI7 483 aaKnown RBP18.13■□□□□ 0.49
HCFC1-201ENST00000310441 KIF5CO60282 957 aa18.12■□□□□ 0.49
HCFC1-201ENST00000310441 CALCOCO1Q9P1Z2 691 aa18.12■□□□□ 0.49
HCFC1-201ENST00000310441 K7ELQ4 463 aaPredicted RBP18.12■□□□□ 0.49
HCFC1-201ENST00000310441 PHAXQ9H814 394 aaKnown RBP18.12■□□□□ 0.49
HCFC1-201ENST00000310441 PPP6R1Q9UPN7 881 aa18.12■□□□□ 0.49
HCFC1-201ENST00000310441 SPATA32Q96LK8 384 aa18.12■□□□□ 0.49
HCFC1-201ENST00000310441 SEPT11Q9NVA2 429 aaKnown RBP18.12■□□□□ 0.49
HCFC1-201ENST00000310441 PLEKHH2Q8IVE3 1493 aa18.12■□□□□ 0.49
HCFC1-201ENST00000310441 SURF6O75683 361 aaKnown RBP18.11■□□□□ 0.49
HCFC1-201ENST00000310441 EIF5P55010 431 aaKnown RBP18.11■□□□□ 0.49
HCFC1-201ENST00000310441 HOOK3Q86VS8 718 aa18.11■□□□□ 0.49
HCFC1-201ENST00000310441 KIF18AQ8NI77 898 aa18.11■□□□□ 0.49
HCFC1-201ENST00000310441 GRPEL1Q9HAV7 217 aa18.1■□□□□ 0.49
HCFC1-201ENST00000310441 PNISRQ8TF01 805 aaKnown RBP18.1■□□□□ 0.49
HCFC1-201ENST00000310441 CNNM1Q9NRU3 951 aa18.1■□□□□ 0.49
HCFC1-201ENST00000310441 NUP62CLQ9H1M0 184 aa18.1■□□□□ 0.49
HCFC1-201ENST00000310441 LARP1BQ659C4 914 aaKnown RBP18.1■□□□□ 0.49
HCFC1-201ENST00000310441 FAM193AP78312 1265 aa18.1■□□□□ 0.49
HCFC1-201ENST00000310441 PPP4R3AQ6IN85 833 aa18.1■□□□□ 0.49
HCFC1-201ENST00000310441 DNAJC2Q99543 621 aaKnown RBP18.1■□□□□ 0.49
HCFC1-201ENST00000310441 SFPQP23246 707 aaKnown RBP eCLIP18.09■□□□□ 0.49
HCFC1-201ENST00000310441 PLEKHO1Q53GL0 409 aaPredicted RBP18.09■□□□□ 0.49
HCFC1-201ENST00000310441 NAA15Q9BXJ9 866 aaKnown RBP18.09■□□□□ 0.49
HCFC1-201ENST00000310441 MATR3P43243 847 aaKnown RBP eCLIP18.09■□□□□ 0.49
HCFC1-201ENST00000310441 BBXQ8WY36 941 aaPredicted RBP18.09■□□□□ 0.49
HCFC1-201ENST00000310441 FKBP15Q5T1M5 1219 aa18.09■□□□□ 0.49
HCFC1-201ENST00000310441 IL27Q8NEV9 243 aa18.09■□□□□ 0.49
HCFC1-201ENST00000310441 SREK1Q8WXA9 508 aaKnown RBP18.09■□□□□ 0.49
HCFC1-201ENST00000310441 FERMT1Q9BQL6 677 aa18.09■□□□□ 0.49
HCFC1-201ENST00000310441 RAB34Q9BZG1 259 aa18.09■□□□□ 0.49
HCFC1-201ENST00000310441 ARHGAP5Q13017 1502 aa18.08■□□□□ 0.49
HCFC1-201ENST00000310441 AIMP1Q12904 312 aaKnown RBP18.08■□□□□ 0.49
HCFC1-201ENST00000310441 MAP3K11Q16584 847 aa18.08■□□□□ 0.48
HCFC1-201ENST00000310441 UBAC1Q9BSL1 405 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms