RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 LARP1BQ659C4 914 aaKnown RBP20.58■□□□□ 0.89
SYNPO-201ENST00000307662 NUP62CLQ9H1M0 184 aa20.58■□□□□ 0.89
SYNPO-201ENST00000307662 MRC2Q9UBG0 1479 aa20.58■□□□□ 0.89
SYNPO-201ENST00000307662 WDR97A6NE52 1622 aa20.58■□□□□ 0.88
SYNPO-201ENST00000307662 PPFIBP1Q86W92 1011 aa20.58■□□□□ 0.88
SYNPO-201ENST00000307662 PSME1Q06323 249 aa20.57■□□□□ 0.88
SYNPO-201ENST00000307662 SART3Q15020 963 aaKnown RBP20.57■□□□□ 0.88
SYNPO-201ENST00000307662 DACH1Q9UI36 760 aa20.57■□□□□ 0.88
SYNPO-201ENST00000307662 ME1P48163 572 aa20.57■□□□□ 0.88
SYNPO-201ENST00000307662 DNAJC2Q99543 621 aaKnown RBP20.57■□□□□ 0.88
SYNPO-201ENST00000307662 DAPK1P53355 1430 aa20.57■□□□□ 0.88
SYNPO-201ENST00000307662 HSP90AB2PQ58FF8 381 aa20.57■□□□□ 0.88
SYNPO-201ENST00000307662 PDCL3Q9H2J4 239 aa20.56■□□□□ 0.88
SYNPO-201ENST00000307662 SKIDA1Q1XH10 827 aa20.56■□□□□ 0.88
SYNPO-201ENST00000307662 KDM4AO75164 1064 aa20.56■□□□□ 0.88
SYNPO-201ENST00000307662 SPATA32Q96LK8 384 aa20.56■□□□□ 0.88
SYNPO-201ENST00000307662 TRIM34Q9BYJ4 488 aa20.56■□□□□ 0.88
SYNPO-201ENST00000307662 ERICH4A6NGS2 130 aa20.55■□□□□ 0.88
SYNPO-201ENST00000307662 CCT4P50991 539 aaKnown RBP20.55■□□□□ 0.88
SYNPO-201ENST00000307662 ZNHIT6Q9NWK9 470 aaKnown RBP20.55■□□□□ 0.88
SYNPO-201ENST00000307662 ATP2B1P20020 1258 aa20.55■□□□□ 0.88
SYNPO-201ENST00000307662 CEP57L1Q8IYX8 460 aa20.55■□□□□ 0.88
SYNPO-201ENST00000307662 ZSCAN31Q96LW9 406 aaPredicted RBP20.55■□□□□ 0.88
SYNPO-201ENST00000307662 SRCIN1Q9C0H9 1055 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 STK3Q13188 491 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 GOLGA6L10A6NI86 522 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 HSP90AB3PQ58FF7 597 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 USP8P40818 1118 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 ODF2Q5BJF6 829 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 SLFN5Q08AF3 891 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 GAS2L2Q8NHY3 880 aa20.54■□□□□ 0.88
SYNPO-201ENST00000307662 TXLNAP40222 546 aa20.53■□□□□ 0.88
SYNPO-201ENST00000307662 FAM177A1Q8N128 213 aaPredicted RBP20.53■□□□□ 0.88
SYNPO-201ENST00000307662 SLC4A2P04920 1241 aa20.52■□□□□ 0.88
SYNPO-201ENST00000307662 CCDC43Q96MW1 224 aaKnown RBP20.52■□□□□ 0.88
SYNPO-201ENST00000307662 SUPT6HQ7KZ85 1726 aaKnown RBP20.52■□□□□ 0.88
SYNPO-201ENST00000307662 CBX1P83916 185 aa20.52■□□□□ 0.88
SYNPO-201ENST00000307662 FILIP1Q7Z7B0 1213 aa20.52■□□□□ 0.88
SYNPO-201ENST00000307662 CFAP45Q9UL16 551 aa20.52■□□□□ 0.88
SYNPO-201ENST00000307662 PDIA4P13667 645 aaKnown RBP20.52■□□□□ 0.87
SYNPO-201ENST00000307662 EVA1CP58658 441 aa20.52■□□□□ 0.87
SYNPO-201ENST00000307662 PDRG1Q9NUG6 133 aa20.51■□□□□ 0.87
SYNPO-201ENST00000307662 KIF2AO00139 706 aaPredicted RBP20.51■□□□□ 0.87
SYNPO-201ENST00000307662 MAP3K11Q16584 847 aa20.51■□□□□ 0.87
SYNPO-201ENST00000307662 UBXN4Q92575 508 aa20.51■□□□□ 0.87
SYNPO-201ENST00000307662 PRDM10Q9NQV6 1147 aa20.51■□□□□ 0.87
SYNPO-201ENST00000307662 PPP6R1Q9UPN7 881 aa20.51■□□□□ 0.87
SYNPO-201ENST00000307662 NAIPQ13075 1403 aa20.51■□□□□ 0.87
SYNPO-201ENST00000307662 TBC1D2BQ9UPU7 963 aa20.5■□□□□ 0.87
SYNPO-201ENST00000307662 UPF3BQ9BZI7 483 aaKnown RBP20.5■□□□□ 0.87
SYNPO-201ENST00000307662 ERLIN2O94905 339 aa20.5■□□□□ 0.87
SYNPO-201ENST00000307662 DNMBPQ6XZF7 1577 aa20.49■□□□□ 0.87
SYNPO-201ENST00000307662 CCDC181Q5TID7 509 aa20.49■□□□□ 0.87
SYNPO-201ENST00000307662 XPCQ01831 940 aaPredicted RBP20.49■□□□□ 0.87
SYNPO-201ENST00000307662 TMCO3Q6UWJ1 677 aa20.49■□□□□ 0.87
SYNPO-201ENST00000307662 DEF6Q9H4E7 631 aa20.49■□□□□ 0.87
SYNPO-201ENST00000307662 ERBINQ96RT1 1412 aa20.49■□□□□ 0.87
SYNPO-201ENST00000307662 BLOC1S2Q6QNY1 142 aa20.48■□□□□ 0.87
SYNPO-201ENST00000307662 SLC12A5Q9H2X9 1139 aa20.48■□□□□ 0.87
SYNPO-201ENST00000307662 SMTNL1A8MU46 457 aa20.48■□□□□ 0.87
SYNPO-201ENST00000307662 RAPGEF4Q8WZA2 1011 aa20.48■□□□□ 0.87
SYNPO-201ENST00000307662 CTDP1Q9Y5B0 961 aaPredicted RBP20.48■□□□□ 0.87
SYNPO-201ENST00000307662 GOLGA6L7A0A1B0GV03 622 aa20.47■□□□□ 0.87
SYNPO-201ENST00000307662 CCDC102AQ96A19 550 aa20.47■□□□□ 0.87
SYNPO-201ENST00000307662 FYB1O15117 783 aa20.47■□□□□ 0.87
SYNPO-201ENST00000307662 PTPN14Q15678 1187 aa20.47■□□□□ 0.87
SYNPO-201ENST00000307662 TXLNBQ8N3L3 684 aa20.47■□□□□ 0.87
SYNPO-201ENST00000307662 LUC7LQ9NQ29 371 aaKnown RBP20.47■□□□□ 0.87
SYNPO-201ENST00000307662 MAP4K4O95819 1239 aaPredicted RBP20.47■□□□□ 0.87
SYNPO-201ENST00000307662 IQCEQ6IPM2 695 aa20.47■□□□□ 0.87
SYNPO-201ENST00000307662 CCDC183Q5T5S1 534 aa20.46■□□□□ 0.87
SYNPO-201ENST00000307662 JAKMIP1Q96N16 626 aaKnown RBP20.46■□□□□ 0.87
SYNPO-201ENST00000307662 TBC1D2Q9BYX2 928 aa20.46■□□□□ 0.87
SYNPO-201ENST00000307662 ZFYVE27Q5T4F4 411 aa20.46■□□□□ 0.87
SYNPO-201ENST00000307662 ZNF428Q96B54 188 aa20.46■□□□□ 0.87
SYNPO-201ENST00000307662 PLCD4Q9BRC7 762 aa20.46■□□□□ 0.87
SYNPO-201ENST00000307662 RPAP2Q8IXW5 612 aaPredicted RBP20.46■□□□□ 0.87
SYNPO-201ENST00000307662 PRAM1Q96QH2 718 aa20.46■□□□□ 0.87
SYNPO-201ENST00000307662 NLRP6P59044 892 aa20.45■□□□□ 0.86
SYNPO-201ENST00000307662 EPRSP07814 1512 aaKnown RBP20.45■□□□□ 0.86
SYNPO-201ENST00000307662 TNPO1Q92973 898 aaKnown RBP20.45■□□□□ 0.86
SYNPO-201ENST00000307662 CGNQ9P2M7 1197 aaKnown RBP20.45■□□□□ 0.86
SYNPO-201ENST00000307662 SNAPC4Q5SXM2 1469 aa20.45■□□□□ 0.86
SYNPO-201ENST00000307662 UBE2Q2Q8WVN8 375 aa20.45■□□□□ 0.86
SYNPO-201ENST00000307662 CDK5RAP3Q96JB5 506 aa20.45■□□□□ 0.86
SYNPO-201ENST00000307662 STIM1Q13586 685 aa20.44■□□□□ 0.86
SYNPO-201ENST00000307662 TMEM57Q8N5G2 664 aa20.44■□□□□ 0.86
SYNPO-201ENST00000307662 MCM5P33992 734 aa20.44■□□□□ 0.86
SYNPO-201ENST00000307662 FAM193AP78312 1265 aa20.44■□□□□ 0.86
SYNPO-201ENST00000307662 SKAP1Q86WV1 359 aa20.43■□□□□ 0.86
SYNPO-201ENST00000307662 CC2D2AQ9P2K1 1620 aa20.43■□□□□ 0.86
SYNPO-201ENST00000307662 C20orf194Q5TEA3 1177 aa20.43■□□□□ 0.86
SYNPO-201ENST00000307662 TRIM22Q8IYM9 498 aa20.43■□□□□ 0.86
SYNPO-201ENST00000307662 KIF18AQ8NI77 898 aa20.43■□□□□ 0.86
SYNPO-201ENST00000307662 GBP3Q9H0R5 595 aa20.43■□□□□ 0.86
SYNPO-201ENST00000307662 SSFA2P28290 1259 aa20.42■□□□□ 0.86
SYNPO-201ENST00000307662 CCAR1Q8IX12 1150 aaKnown RBP20.42■□□□□ 0.86
SYNPO-201ENST00000307662 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
SYNPO-201ENST00000307662 HDGFL1Q5TGJ6 251 aa20.42■□□□□ 0.86
SYNPO-201ENST00000307662 CALCOCO1Q9P1Z2 691 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms