RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 WDR17Q8IZU2 1322 aa21.22■□□□□ 0.99
CCDC88B-201ENST00000301897 COL18A1P39060 1754 aa21.21■□□□□ 0.99
CCDC88B-201ENST00000301897 KCNQ2O43526 872 aa21.21■□□□□ 0.99
CCDC88B-201ENST00000301897 BCL11BQ9C0K0 894 aaPredicted RBP21.21■□□□□ 0.99
CCDC88B-201ENST00000301897 CPSF1Q10570 1443 aaKnown RBP21.21■□□□□ 0.99
CCDC88B-201ENST00000301897 DCAF8L1A6NGE4 600 aa21.2■□□□□ 0.98
CCDC88B-201ENST00000301897 L3MBTL2Q969R5 705 aa21.2■□□□□ 0.98
CCDC88B-201ENST00000301897 TTC21AQ8NDW8 1320 aa21.2■□□□□ 0.98
CCDC88B-201ENST00000301897 BCL9O00512 1426 aa21.2■□□□□ 0.98
CCDC88B-201ENST00000301897 WNK3Q9BYP7 1800 aa21.19■□□□□ 0.98
CCDC88B-201ENST00000301897 NINLQ9Y2I6 1382 aa21.19■□□□□ 0.98
CCDC88B-201ENST00000301897 ARHGEF25Q86VW2 580 aa21.18■□□□□ 0.98
CCDC88B-201ENST00000301897 TTC21BQ7Z4L5 1316 aa21.18■□□□□ 0.98
CCDC88B-201ENST00000301897 AKAP12Q02952 1782 aa21.18■□□□□ 0.98
CCDC88B-201ENST00000301897 CARD10Q9BWT7 1032 aa21.17■□□□□ 0.98
CCDC88B-201ENST00000301897 ABCC6O95255 1503 aa21.16■□□□□ 0.98
CCDC88B-201ENST00000301897 ROCK2O75116 1388 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-201ENST00000301897 AXIN2Q9Y2T1 843 aa21.16■□□□□ 0.98
CCDC88B-201ENST00000301897 CSB-PGBD3P0DP91 1061 aa21.15■□□□□ 0.98
CCDC88B-201ENST00000301897 YY1P25490 414 aa21.14■□□□□ 0.97
CCDC88B-201ENST00000301897 MARCH10Q8NA82 808 aaPredicted RBP21.14■□□□□ 0.97
CCDC88B-201ENST00000301897 CCDC7Q96M83 1385 aa21.13■□□□□ 0.97
CCDC88B-201ENST00000301897 RGPD5Q99666 1765 aa21.13■□□□□ 0.97
CCDC88B-201ENST00000301897 KTN1Q86UP2 1357 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-201ENST00000301897 EXOC5O00471 708 aa21.12■□□□□ 0.97
CCDC88B-201ENST00000301897 NFAT5O94916 1531 aa21.11■□□□□ 0.97
CCDC88B-201ENST00000301897 ANO8Q9HCE9 1232 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-201ENST00000301897 CASZ1Q86V15 1759 aa21.1■□□□□ 0.97
CCDC88B-201ENST00000301897 SOX12O15370 315 aa21.09■□□□□ 0.97
CCDC88B-201ENST00000301897 SBNO2Q9Y2G9 1366 aa21.09■□□□□ 0.97
CCDC88B-201ENST00000301897 MON2Q7Z3U7 1717 aa21.07■□□□□ 0.96
CCDC88B-201ENST00000301897 TNS2Q63HR2 1409 aa21.07■□□□□ 0.96
CCDC88B-201ENST00000301897 PROM2Q8N271 834 aa21.07■□□□□ 0.96
CCDC88B-201ENST00000301897 STK32BQ9NY57 414 aa21.07■□□□□ 0.96
CCDC88B-201ENST00000301897 PTF1AQ7RTS3 328 aa21.06■□□□□ 0.96
CCDC88B-201ENST00000301897 USP54Q70EL1 1684 aa21.05■□□□□ 0.96
CCDC88B-201ENST00000301897 TXNRD1Q16881 649 aa21.05■□□□□ 0.96
CCDC88B-201ENST00000301897 SIN3AQ96ST3 1273 aa21.05■□□□□ 0.96
CCDC88B-201ENST00000301897 USP31Q70CQ4 1352 aa21.05■□□□□ 0.96
CCDC88B-201ENST00000301897 NEUROD1Q13562 356 aa21.04■□□□□ 0.96
CCDC88B-201ENST00000301897 ERBB3P21860 1342 aa21.03■□□□□ 0.96
CCDC88B-201ENST00000301897 SLC15A2Q16348 729 aa21.02■□□□□ 0.96
CCDC88B-201ENST00000301897 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.02■□□□□ 0.96
CCDC88B-201ENST00000301897 NHSQ6T4R5 1651 aa21.02■□□□□ 0.95
CCDC88B-201ENST00000301897 ZBTB7AO95365 584 aa21.01■□□□□ 0.95
CCDC88B-201ENST00000301897 HDGFL2Q7Z4V5 671 aaPredicted RBP21.01■□□□□ 0.95
CCDC88B-201ENST00000301897 NLRP2Q9NX02 1062 aa21.01■□□□□ 0.95
CCDC88B-201ENST00000301897 IL2RBP14784 551 aa20.99■□□□□ 0.95
CCDC88B-201ENST00000301897 PTGER2P43116 358 aa20.99■□□□□ 0.95
CCDC88B-201ENST00000301897 MTFR1LQ9H019 292 aa20.99■□□□□ 0.95
CCDC88B-201ENST00000301897 KAT6BQ8WYB5 2073 aa20.99■□□□□ 0.95
CCDC88B-201ENST00000301897 LTN1O94822 1766 aa20.99■□□□□ 0.95
CCDC88B-201ENST00000301897 EDC4Q6P2E9 1401 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-201ENST00000301897 CARD11Q9BXL7 1154 aa20.98■□□□□ 0.95
CCDC88B-201ENST00000301897 PDGFDQ9GZP0 370 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-201ENST00000301897 TERF2IPQ9NYB0 399 aa20.98■□□□□ 0.95
CCDC88B-201ENST00000301897 MYOM1P52179 1685 aa20.97■□□□□ 0.95
CCDC88B-201ENST00000301897 TMC1Q8TDI8 760 aa20.97■□□□□ 0.95
CCDC88B-201ENST00000301897 PUS7Q96PZ0 661 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-201ENST00000301897 ATF5Q9Y2D1 282 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-201ENST00000301897 CD163L1Q9NR16 1453 aa20.96■□□□□ 0.95
CCDC88B-201ENST00000301897 NME9Q86XW9 330 aa20.96■□□□□ 0.95
CCDC88B-201ENST00000301897 ANKRD24Q8TF21 1146 aa20.95■□□□□ 0.94
CCDC88B-201ENST00000301897 ACSBG1Q96GR2 724 aa20.94■□□□□ 0.94
CCDC88B-201ENST00000301897 BTAF1O14981 1849 aa20.93■□□□□ 0.94
CCDC88B-201ENST00000301897 UTRNP46939 3433 aa20.92■□□□□ 0.94
CCDC88B-201ENST00000301897 SYT17Q9BSW7 474 aa20.92■□□□□ 0.94
CCDC88B-201ENST00000301897 SLC12A5Q9H2X9 1139 aa20.92■□□□□ 0.94
CCDC88B-201ENST00000301897 FAM208AQ9UK61 1670 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-201ENST00000301897 SLC24A1O60721 1099 aa20.91■□□□□ 0.94
CCDC88B-201ENST00000301897 PAPPAQ13219 1627 aa20.91■□□□□ 0.94
CCDC88B-201ENST00000301897 FHDC1Q9C0D6 1143 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-201ENST00000301897 SGIP1Q9BQI5 828 aa20.9■□□□□ 0.94
CCDC88B-201ENST00000301897 A0A1W2PP64 1363 aa20.89■□□□□ 0.93
CCDC88B-201ENST00000301897 MAP3K5Q99683 1374 aa20.89■□□□□ 0.93
CCDC88B-201ENST00000301897 SLC27A3Q5K4L6 730 aa20.89■□□□□ 0.93
CCDC88B-201ENST00000301897 IP6K1Q92551 441 aa20.89■□□□□ 0.93
CCDC88B-201ENST00000301897 ARXQ96QS3 562 aa20.89■□□□□ 0.93
CCDC88B-201ENST00000301897 CHD4Q14839 1912 aa20.88■□□□□ 0.93
CCDC88B-201ENST00000301897 SLC16A10Q8TF71 515 aa20.87■□□□□ 0.93
CCDC88B-201ENST00000301897 TONSLQ96HA7 1378 aa20.86■□□□□ 0.93
CCDC88B-201ENST00000301897 QSER1Q2KHR3 1735 aa20.84■□□□□ 0.93
CCDC88B-201ENST00000301897 ZNF784Q8NCA9 323 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-201ENST00000301897 DDX54Q8TDD1 881 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-201ENST00000301897 COG3Q96JB2 828 aa20.84■□□□□ 0.93
CCDC88B-201ENST00000301897 ZNF827Q17R98 1081 aa20.83■□□□□ 0.93
CCDC88B-201ENST00000301897 LRRC4BQ9NT99 713 aa20.83■□□□□ 0.93
CCDC88B-201ENST00000301897 AKT1S1Q96B36 256 aa20.82■□□□□ 0.92
CCDC88B-201ENST00000301897 POLD1P28340 1107 aa20.81■□□□□ 0.92
CCDC88B-201ENST00000301897 LTV1Q96GA3 475 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-201ENST00000301897 AMPHP49418 695 aa20.8■□□□□ 0.92
CCDC88B-201ENST00000301897 ANKRD36BQ8N2N9 1353 aa20.8■□□□□ 0.92
CCDC88B-201ENST00000301897 HOXC9P31274 260 aa20.79■□□□□ 0.92
CCDC88B-201ENST00000301897 RTL1A6NKG5 1358 aa20.79■□□□□ 0.92
CCDC88B-201ENST00000301897 MAP3K19Q56UN5 1328 aa20.78■□□□□ 0.92
CCDC88B-201ENST00000301897 HMGB2P26583 209 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-201ENST00000301897 ZCRB1Q8TBF4 217 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-201ENST00000301897 SYTL4Q96C24 671 aaPredicted RBP20.78■□□□□ 0.92
CCDC88B-201ENST00000301897 TESK2Q96S53 571 aa20.78■□□□□ 0.92
CCDC88B-201ENST00000301897 TFCP2L1Q9NZI6 479 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms