RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 TTC39AQ5SRH9 613 aa15.28■□□□□ 0.04
PTCD1-201ENST00000292478 TEX35Q5T0J7 233 aa15.28■□□□□ 0.04
PTCD1-201ENST00000292478 WDR33Q9C0J8 1336 aaKnown RBP15.28■□□□□ 0.04
PTCD1-201ENST00000292478 NCOA1Q15788 1441 aa15.28■□□□□ 0.04
PTCD1-201ENST00000292478 ZSCAN25Q6NSZ9 544 aa15.27■□□□□ 0.04
PTCD1-201ENST00000292478 CCDC173Q0VFZ6 552 aa15.27■□□□□ 0.04
PTCD1-201ENST00000292478 NUDT16Q96DE0 195 aaKnown RBP15.27■□□□□ 0.04
PTCD1-201ENST00000292478 CCDC184Q52MB2 194 aa15.27■□□□□ 0.03
PTCD1-201ENST00000292478 FAM135AQ9P2D6 1515 aa15.27■□□□□ 0.03
PTCD1-201ENST00000292478 CAVIN1Q6NZI2 390 aaKnown RBP15.27■□□□□ 0.03
PTCD1-201ENST00000292478 KCNH5Q8NCM2 988 aa15.27■□□□□ 0.03
PTCD1-201ENST00000292478 FBXW7Q969H0 707 aa15.27■□□□□ 0.03
PTCD1-201ENST00000292478 RPRD2Q5VT52 1461 aaKnown RBP15.27■□□□□ 0.03
PTCD1-201ENST00000292478 JMYQ8N9B5 988 aa15.26■□□□□ 0.03
PTCD1-201ENST00000292478 ZSCAN31Q96LW9 406 aaPredicted RBP15.26■□□□□ 0.03
PTCD1-201ENST00000292478 NSD2O96028 1365 aa15.26■□□□□ 0.03
PTCD1-201ENST00000292478 CCP110O43303 1012 aa15.26■□□□□ 0.03
PTCD1-201ENST00000292478 MTERF4Q7Z6M4 381 aaKnown RBP15.26■□□□□ 0.03
PTCD1-201ENST00000292478 FOSBP53539 338 aa15.26■□□□□ 0.03
PTCD1-201ENST00000292478 ACBD3Q9H3P7 528 aa15.26■□□□□ 0.03
PTCD1-201ENST00000292478 PLB1Q6P1J6 1458 aa15.26■□□□□ 0.03
PTCD1-201ENST00000292478 PRPF40AO75400 957 aaKnown RBP15.26■□□□□ 0.03
PTCD1-201ENST00000292478 ANO8Q9HCE9 1232 aaPredicted RBP15.25■□□□□ 0.03
PTCD1-201ENST00000292478 CD109Q6YHK3 1445 aa15.25■□□□□ 0.03
PTCD1-201ENST00000292478 PIP4K2AP48426 406 aaPredicted RBP15.25■□□□□ 0.03
PTCD1-201ENST00000292478 MNS1Q8NEH6 495 aa15.25■□□□□ 0.03
PTCD1-201ENST00000292478 CCDC43Q96MW1 224 aaKnown RBP15.25■□□□□ 0.03
PTCD1-201ENST00000292478 SETQ01105 290 aaPredicted RBP15.25■□□□□ 0.03
PTCD1-201ENST00000292478 ADGRL1O94910 1474 aa15.25■□□□□ 0.03
PTCD1-201ENST00000292478 CNNM1Q9NRU3 951 aa15.25■□□□□ 0.03
PTCD1-201ENST00000292478 NKTRP30414 1462 aaKnown RBP15.25■□□□□ 0.03
PTCD1-201ENST00000292478 THOC2Q8NI27 1593 aaKnown RBP15.24■□□□□ 0.03
PTCD1-201ENST00000292478 RBM42Q9BTD8 480 aaKnown RBP15.24■□□□□ 0.03
PTCD1-201ENST00000292478 GNAT3A8MTJ3 354 aa15.24■□□□□ 0.03
PTCD1-201ENST00000292478 SCAF11Q99590 1463 aaKnown RBP15.24■□□□□ 0.03
PTCD1-201ENST00000292478 NACAP1Q9BZK3 213 aa15.24■□□□□ 0.03
PTCD1-201ENST00000292478 KRT32Q14532 448 aa15.23■□□□□ 0.03
PTCD1-201ENST00000292478 PPP6R1Q9UPN7 881 aa15.23■□□□□ 0.03
PTCD1-201ENST00000292478 MAP7D2Q96T17 732 aa15.23■□□□□ 0.03
PTCD1-201ENST00000292478 BTBD11A6QL63 1104 aa15.23■□□□□ 0.03
PTCD1-201ENST00000292478 TXLNAP40222 546 aa15.23■□□□□ 0.03
PTCD1-201ENST00000292478 PRM3Q9NNZ6 103 aa15.23■□□□□ 0.03
PTCD1-201ENST00000292478 TRIM5Q9C035 493 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 PDE4CQ08493 712 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 RRS1Q15050 365 aaKnown RBP15.22■□□□□ 0.03
PTCD1-201ENST00000292478 STK38Q15208 465 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 RAB11FIP3O75154 756 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 FYB1O15117 783 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 CTNNA3Q9UI47 895 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 FILIP1LQ4L180 1135 aa15.22■□□□□ 0.03
PTCD1-201ENST00000292478 SRGAP3O43295 1099 aa15.21■□□□□ 0.03
PTCD1-201ENST00000292478 TOM1L2Q6ZVM7 507 aa15.21■□□□□ 0.03
PTCD1-201ENST00000292478 TMEM57Q8N5G2 664 aa15.21■□□□□ 0.03
PTCD1-201ENST00000292478 KRT85P78386 507 aa15.21■□□□□ 0.03
PTCD1-201ENST00000292478 CCDC192P0DO97 292 aa15.21■□□□□ 0.02
PTCD1-201ENST00000292478 CDR1P51861 262 aa15.21■□□□□ 0.02
PTCD1-201ENST00000292478 CCDC57Q2TAC2 916 aa15.21■□□□□ 0.02
PTCD1-201ENST00000292478 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.2■□□□□ 0.02
PTCD1-201ENST00000292478 RARSP54136 660 aaKnown RBP15.2■□□□□ 0.02
PTCD1-201ENST00000292478 FAM13BQ9NYF5 915 aa15.2■□□□□ 0.02
PTCD1-201ENST00000292478 TRIM22Q8IYM9 498 aa15.2■□□□□ 0.02
PTCD1-201ENST00000292478 RNF214Q8ND24 703 aa15.2■□□□□ 0.02
PTCD1-201ENST00000292478 AACSQ86V21 672 aa15.2■□□□□ 0.02
PTCD1-201ENST00000292478 SLC26A8Q96RN1 970 aa15.2■□□□□ 0.02
PTCD1-201ENST00000292478 BLOC1S2Q6QNY1 142 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 SMARCE1Q969G3 411 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 FIBPO43427 364 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 ZNF771Q7L3S4 317 aaPredicted RBP15.19■□□□□ 0.02
PTCD1-201ENST00000292478 AK7Q96M32 723 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 DACH1Q9UI36 760 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 CDKL5O76039 1030 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 HMGN5P82970 282 aaKnown RBP15.19■□□□□ 0.02
PTCD1-201ENST00000292478 STRN4Q9NRL3 753 aa15.19■□□□□ 0.02
PTCD1-201ENST00000292478 HMGB2P26583 209 aaKnown RBP15.18■□□□□ 0.02
PTCD1-201ENST00000292478 PDRG1Q9NUG6 133 aa15.18■□□□□ 0.02
PTCD1-201ENST00000292478 EPS15P42566 896 aa15.18■□□□□ 0.02
PTCD1-201ENST00000292478 AMOTQ4VCS5 1084 aa15.18■□□□□ 0.02
PTCD1-201ENST00000292478 KIF1BPQ96EK5 621 aa15.18■□□□□ 0.02
PTCD1-201ENST00000292478 PDILTQ8N807 584 aa15.17■□□□□ 0.02
PTCD1-201ENST00000292478 RUFY1Q96T51 708 aa15.17■□□□□ 0.02
PTCD1-201ENST00000292478 CEP126Q9P2H0 1117 aa15.17■□□□□ 0.02
PTCD1-201ENST00000292478 C11orf95C9JLR9 678 aaPredicted RBP15.17■□□□□ 0.02
PTCD1-201ENST00000292478 DUSP27Q5VZP5 1158 aa15.17■□□□□ 0.02
PTCD1-201ENST00000292478 ERCC4Q92889 916 aaPredicted RBP15.17■□□□□ 0.02
PTCD1-201ENST00000292478 LARP1BQ659C4 914 aaKnown RBP15.17■□□□□ 0.02
PTCD1-201ENST00000292478 DNAJC5BQ9UF47 199 aa15.17■□□□□ 0.02
PTCD1-201ENST00000292478 CFAP45Q9UL16 551 aa15.17■□□□□ 0.02
PTCD1-201ENST00000292478 URB2Q14146 1524 aaKnown RBP15.16■□□□□ 0.02
PTCD1-201ENST00000292478 LRPPRCP42704 1394 aaKnown RBP15.16■□□□□ 0.02
PTCD1-201ENST00000292478 SIL1Q9H173 461 aa15.16■□□□□ 0.02
PTCD1-201ENST00000292478 MAGEC2Q9UBF1 373 aaPredicted RBP15.16■□□□□ 0.02
PTCD1-201ENST00000292478 NAP1L1P55209 391 aaKnown RBP15.16■□□□□ 0.02
PTCD1-201ENST00000292478 CCDC69A6NI79 296 aa15.16■□□□□ 0.02
PTCD1-201ENST00000292478 OFD1O75665 1012 aa15.16■□□□□ 0.02
PTCD1-201ENST00000292478 SMC2O95347 1197 aa15.16■□□□□ 0.02
PTCD1-201ENST00000292478 R3HCC1Q9Y3T6 440 aaKnown RBP15.16■□□□□ 0.02
PTCD1-201ENST00000292478 HSP90B2PQ58FF3 399 aa15.16■□□□□ 0.02
PTCD1-201ENST00000292478 MYL6BP14649 208 aa15.15■□□□□ 0.02
PTCD1-201ENST00000292478 MCM4P33991 863 aa15.15■□□□□ 0.02
PTCD1-201ENST00000292478 CDK5RAP3Q96JB5 506 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms