RNA–Protein interactions for RNA: ENST00000288976.3

PTPDC1-201, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,398 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-201ENST00000288976 WNK3Q9BYP7 1800 aa11.24□□□□□ -0.61
PTPDC1-201ENST00000288976 GCP02774 474 aa11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 XPCQ01831 940 aaPredicted RBP11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 NCBP3Q53F19 620 aaKnown RBP11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 MAP3K19Q56UN5 1328 aa11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 DDX17Q92841 729 aaKnown RBP11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 ZBTB47Q9UFB7 747 aaPredicted RBP11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 ARHGEF25Q86VW2 580 aa11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 JCADQ9P266 1359 aa11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 RGPD5Q99666 1765 aa11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 IP6K1Q92551 441 aa11.23□□□□□ -0.61
PTPDC1-201ENST00000288976 NUDCQ9Y266 331 aa11.22□□□□□ -0.61
PTPDC1-201ENST00000288976 DIAPH1O60610 1272 aaKnown RBP11.22□□□□□ -0.61
PTPDC1-201ENST00000288976 HOXC9P31274 260 aa11.22□□□□□ -0.61
PTPDC1-201ENST00000288976 CCDC184Q52MB2 194 aa11.22□□□□□ -0.61
PTPDC1-201ENST00000288976 EMILIN1Q9Y6C2 1016 aa11.22□□□□□ -0.61
PTPDC1-201ENST00000288976 PNNQ9H307 717 aaKnown RBP11.21□□□□□ -0.61
PTPDC1-201ENST00000288976 PARP4Q9UKK3 1724 aaKnown RBP11.21□□□□□ -0.61
PTPDC1-201ENST00000288976 IL13P35225 146 aa11.21□□□□□ -0.62
PTPDC1-201ENST00000288976 WDR43Q15061 677 aaKnown RBP eCLIP11.21□□□□□ -0.62
PTPDC1-201ENST00000288976 TNNT2P45379 298 aaPredicted RBP11.21□□□□□ -0.62
PTPDC1-201ENST00000288976 NGEFQ8N5V2 710 aa11.21□□□□□ -0.62
PTPDC1-201ENST00000288976 SPATA31A6Q5VVP1 1343 aa11.2□□□□□ -0.62
PTPDC1-201ENST00000288976 RRS1Q15050 365 aaKnown RBP11.2□□□□□ -0.62
PTPDC1-201ENST00000288976 KDRP35968 1356 aa11.2□□□□□ -0.62
PTPDC1-201ENST00000288976 PKD1L3Q7Z443 1732 aa11.19□□□□□ -0.62
PTPDC1-201ENST00000288976 AMPHP49418 695 aa11.19□□□□□ -0.62
PTPDC1-201ENST00000288976 NUTM2GQ5VZR2 741 aa11.19□□□□□ -0.62
PTPDC1-201ENST00000288976 NPM2Q86SE8 214 aaKnown RBP11.19□□□□□ -0.62
PTPDC1-201ENST00000288976 RGPD2P0DJD1 1756 aa11.18□□□□□ -0.62
PTPDC1-201ENST00000288976 IGSF1Q8N6C5 1336 aa11.18□□□□□ -0.62
PTPDC1-201ENST00000288976 COL5A2P05997 1499 aaPredicted RBP11.18□□□□□ -0.62
PTPDC1-201ENST00000288976 PIP4K2BP78356 416 aa11.18□□□□□ -0.62
PTPDC1-201ENST00000288976 ARXQ96QS3 562 aa11.18□□□□□ -0.62
PTPDC1-201ENST00000288976 EIF4A2Q14240 407 aaKnown RBP11.17□□□□□ -0.62
PTPDC1-201ENST00000288976 KIAA0232Q92628 1395 aa11.17□□□□□ -0.62
PTPDC1-201ENST00000288976 FCHSD2O94868 740 aa11.17□□□□□ -0.62
PTPDC1-201ENST00000288976 SLIT2O94813 1529 aa11.16□□□□□ -0.62
PTPDC1-201ENST00000288976 LRRC37A3O60309 1634 aa11.16□□□□□ -0.62
PTPDC1-201ENST00000288976 CANXP27824 592 aaKnown RBP11.15□□□□□ -0.62
PTPDC1-201ENST00000288976 ERBB3P21860 1342 aa11.15□□□□□ -0.62
PTPDC1-201ENST00000288976 RUNDC1Q96C34 613 aa11.15□□□□□ -0.62
PTPDC1-201ENST00000288976 ADAMTS7Q9UKP4 1686 aa11.15□□□□□ -0.62
PTPDC1-201ENST00000288976 ADAMTS8Q9UP79 889 aa11.15□□□□□ -0.62
PTPDC1-201ENST00000288976 SALL2Q9Y467 1007 aaPredicted RBP11.15□□□□□ -0.62
PTPDC1-201ENST00000288976 PLEKHF1Q96S99 279 aa11.14□□□□□ -0.63
PTPDC1-201ENST00000288976 HSP90AB2PQ58FF8 381 aa11.14□□□□□ -0.63
PTPDC1-201ENST00000288976 RSPH6AQ9H0K4 717 aa11.14□□□□□ -0.63
PTPDC1-201ENST00000288976 ZBED9Q6R2W3 1325 aa11.14□□□□□ -0.63
PTPDC1-201ENST00000288976 FBLN1P23142 703 aa11.14□□□□□ -0.63
PTPDC1-201ENST00000288976 FAM9BQ8IZU0 186 aa11.14□□□□□ -0.63
PTPDC1-201ENST00000288976 LRP6O75581 1613 aa11.13□□□□□ -0.63
PTPDC1-201ENST00000288976 PPM1GO15355 546 aaPredicted RBP11.13□□□□□ -0.63
PTPDC1-201ENST00000288976 CRB1P82279 1406 aa11.13□□□□□ -0.63
PTPDC1-201ENST00000288976 ANKRD24Q8TF21 1146 aa11.13□□□□□ -0.63
PTPDC1-201ENST00000288976 DLG5Q8TDM6 1919 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 WDR17Q8IZU2 1322 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 CCDC27Q2M243 656 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 CABLES1Q8TDN4 633 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 SHANK3Q9BYB0 1731 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 OVOS2A0A0G2JMS6 1433 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 U2AF1L5P0DN76 240 aaPredicted RBP11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 U2AF1Q01081 240 aaKnown RBP eCLIP11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 PRDM11Q9NQV5 511 aa11.12□□□□□ -0.63
PTPDC1-201ENST00000288976 SOX12O15370 315 aa11.11□□□□□ -0.63
PTPDC1-201ENST00000288976 HSPA1LP34931 641 aa11.11□□□□□ -0.63
PTPDC1-201ENST00000288976 FBXO41Q8TF61 875 aa11.11□□□□□ -0.63
PTPDC1-201ENST00000288976 ZC3H6P61129 1189 aaKnown RBP11.1□□□□□ -0.63
PTPDC1-201ENST00000288976 EYA1Q99502 592 aa11.1□□□□□ -0.63
PTPDC1-201ENST00000288976 U2SURPO15042 1029 aaKnown RBP11.1□□□□□ -0.63
PTPDC1-201ENST00000288976 AXIN2Q9Y2T1 843 aa11.1□□□□□ -0.63
PTPDC1-201ENST00000288976 MAPK8IP3Q9UPT6 1336 aa11.1□□□□□ -0.63
PTPDC1-201ENST00000288976 DISP2A7MBM2 1401 aa11.09□□□□□ -0.63
PTPDC1-201ENST00000288976 VIRMAQ69YN4 1812 aaKnown RBP11.09□□□□□ -0.63
PTPDC1-201ENST00000288976 FAM83GA6ND36 823 aa11.09□□□□□ -0.63
PTPDC1-201ENST00000288976 PHF23Q9BUL5 403 aaPredicted RBP11.09□□□□□ -0.63
PTPDC1-201ENST00000288976 THSD7AQ9UPZ6 1657 aa11.09□□□□□ -0.63
PTPDC1-201ENST00000288976 CARD10Q9BWT7 1032 aa11.08□□□□□ -0.64
PTPDC1-201ENST00000288976 PDE3BQ13370 1112 aa11.08□□□□□ -0.64
PTPDC1-201ENST00000288976 ZNF521Q96K83 1311 aa11.08□□□□□ -0.64
PTPDC1-201ENST00000288976 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.08□□□□□ -0.642e-7■■■■■ 33.7
PTPDC1-201ENST00000288976 THRAP3Q9Y2W1 955 aaKnown RBP11.08□□□□□ -0.64
PTPDC1-201ENST00000288976 SIPA1L3O60292 1781 aaPredicted RBP11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 HTATSF1O43719 755 aaKnown RBP11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 PRKAR2BP31323 418 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 LMOD3Q0VAK6 560 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 NBPF6Q5VWK0 638 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 NBPF4Q96M43 638 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 SULT6B1Q6IMI4 303 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 NFE2L2Q16236 605 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 AMOTQ4VCS5 1084 aa11.07□□□□□ -0.64
PTPDC1-201ENST00000288976 MRC1P22897 1456 aa11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 HNRNPUQ00839 825 aaKnown RBP eCLIP11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 FNBP4Q8N3X1 1017 aaPredicted RBP11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 GAS2L2Q8NHY3 880 aa11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 MEGF6O75095 1541 aa11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 SCN11AQ9UI33 1791 aa11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 IL16Q14005 1332 aa11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 BCL9LQ86UU0 1499 aa11.06□□□□□ -0.64
PTPDC1-201ENST00000288976 CHRNA2Q15822 529 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms