RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 NME9Q86XW9 330 aa20.31■□□□□ 0.84
COPS3-201ENST00000268717 BCL9LQ86UU0 1499 aa20.31■□□□□ 0.84
COPS3-201ENST00000268717 SLIT2O94813 1529 aa20.31■□□□□ 0.84
COPS3-201ENST00000268717 ZNF521Q96K83 1311 aa20.3■□□□□ 0.84
COPS3-201ENST00000268717 PLCH1Q4KWH8 1693 aa20.3■□□□□ 0.84
COPS3-201ENST00000268717 NWD2Q9ULI1 1742 aa20.29■□□□□ 0.84
COPS3-201ENST00000268717 PHRF1Q9P1Y6 1649 aaKnown RBP20.29■□□□□ 0.84
COPS3-201ENST00000268717 ATRNO75882 1429 aa20.29■□□□□ 0.84
COPS3-201ENST00000268717 CDK12Q9NYV4 1490 aaPredicted RBP20.29■□□□□ 0.84
COPS3-201ENST00000268717 POLKQ9UBT6 870 aa20.28■□□□□ 0.84
COPS3-201ENST00000268717 TRPC5Q9UL62 973 aaPredicted RBP20.28■□□□□ 0.84
COPS3-201ENST00000268717 USP31Q70CQ4 1352 aa20.28■□□□□ 0.84
COPS3-201ENST00000268717 RBM6P78332 1123 aaKnown RBP20.27■□□□□ 0.84
COPS3-201ENST00000268717 RUNDC1Q96C34 613 aa20.27■□□□□ 0.84
COPS3-201ENST00000268717 ZRANB1Q9UGI0 708 aa20.27■□□□□ 0.84
COPS3-201ENST00000268717 SUPT16HQ9Y5B9 1047 aaKnown RBP20.27■□□□□ 0.84
COPS3-201ENST00000268717 ABTB2Q8N961 1025 aa20.26■□□□□ 0.83
COPS3-201ENST00000268717 NUTM2GQ5VZR2 741 aa20.25■□□□□ 0.83
COPS3-201ENST00000268717 ERICH6BQ5W0A0 696 aa20.25■□□□□ 0.83
COPS3-201ENST00000268717 UNC5CLQ8IV45 518 aa20.25■□□□□ 0.83
COPS3-201ENST00000268717 COL14A1Q05707 1796 aaKnown RBP20.25■□□□□ 0.83
COPS3-201ENST00000268717 FAM83GA6ND36 823 aa20.24■□□□□ 0.83
COPS3-201ENST00000268717 DIAPH1O60610 1272 aaKnown RBP20.24■□□□□ 0.83
COPS3-201ENST00000268717 RNF123Q5XPI4 1314 aa20.24■□□□□ 0.83
COPS3-201ENST00000268717 APAF1O14727 1248 aa20.24■□□□□ 0.83
COPS3-201ENST00000268717 CCDC146Q8IYE0 955 aa20.24■□□□□ 0.83
COPS3-201ENST00000268717 PIK3C2AO00443 1686 aa20.23■□□□□ 0.83
COPS3-201ENST00000268717 USP54Q70EL1 1684 aa20.23■□□□□ 0.83
COPS3-201ENST00000268717 PNNQ9H307 717 aaKnown RBP20.23■□□□□ 0.83
COPS3-201ENST00000268717 RGS12O14924 1447 aa20.23■□□□□ 0.83
COPS3-201ENST00000268717 NRAPQ86VF7 1730 aa20.22■□□□□ 0.83
COPS3-201ENST00000268717 MAP2P11137 1827 aaKnown RBP20.22■□□□□ 0.83
COPS3-201ENST00000268717 FBLN1P23142 703 aa20.22■□□□□ 0.83
COPS3-201ENST00000268717 FKBP8Q14318 412 aa20.22■□□□□ 0.83
COPS3-201ENST00000268717 SALL2Q9Y467 1007 aaPredicted RBP20.22■□□□□ 0.83
COPS3-201ENST00000268717 USP19O94966 1318 aa20.22■□□□□ 0.83
COPS3-201ENST00000268717 U2AF1L5P0DN76 240 aaPredicted RBP20.21■□□□□ 0.83
COPS3-201ENST00000268717 U2AF1Q01081 240 aaKnown RBP eCLIP20.21■□□□□ 0.83
COPS3-201ENST00000268717 CCDC27Q2M243 656 aa20.21■□□□□ 0.83
COPS3-201ENST00000268717 GOLGA2Q08379 1002 aa20.2■□□□□ 0.82
COPS3-201ENST00000268717 KIAA0232Q92628 1395 aa20.19■□□□□ 0.82
COPS3-201ENST00000268717 GJD4Q96KN9 370 aaPredicted RBP20.19■□□□□ 0.82
COPS3-201ENST00000268717 GLI3P10071 1580 aa20.19■□□□□ 0.82
COPS3-201ENST00000268717 PRDM11Q9NQV5 511 aa20.18■□□□□ 0.82
COPS3-201ENST00000268717 EMILIN1Q9Y6C2 1016 aa20.18■□□□□ 0.82
COPS3-201ENST00000268717 FCHSD2O94868 740 aa20.17■□□□□ 0.82
COPS3-201ENST00000268717 NLRP6P59044 892 aa20.17■□□□□ 0.82
COPS3-201ENST00000268717 TCP11L2Q8N4U5 519 aa20.17■□□□□ 0.82
COPS3-201ENST00000268717 CDCA7LQ96GN5 454 aa20.17■□□□□ 0.82
COPS3-201ENST00000268717 BTG4Q9NY30 223 aa20.17■□□□□ 0.82
COPS3-201ENST00000268717 SLIT3O75094 1523 aa20.17■□□□□ 0.82
COPS3-201ENST00000268717 ZC3H6P61129 1189 aaKnown RBP20.16■□□□□ 0.82
COPS3-201ENST00000268717 VPS72Q15906 364 aa20.16■□□□□ 0.82
COPS3-201ENST00000268717 TRMT2AQ8IZ69 625 aaKnown RBP20.16■□□□□ 0.82
COPS3-201ENST00000268717 PLEKHF1Q96S99 279 aa20.16■□□□□ 0.82
COPS3-201ENST00000268717 KIF24Q5T7B8 1368 aa20.16■□□□□ 0.82
COPS3-201ENST00000268717 U2SURPO15042 1029 aaKnown RBP20.16■□□□□ 0.82
COPS3-201ENST00000268717 GCP02774 474 aa20.16■□□□□ 0.82
COPS3-201ENST00000268717 IL13P35225 146 aa20.16■□□□□ 0.82
COPS3-201ENST00000268717 CPDO75976 1380 aa20.15■□□□□ 0.82
COPS3-201ENST00000268717 E9PSI1 815 aa20.15■□□□□ 0.82
COPS3-201ENST00000268717 SLFN5Q08AF3 891 aa20.15■□□□□ 0.82
COPS3-201ENST00000268717 DUSP27Q5VZP5 1158 aa20.15■□□□□ 0.82
COPS3-201ENST00000268717 WWC1Q8IX03 1113 aa20.14■□□□□ 0.81
COPS3-201ENST00000268717 CHRNA2Q15822 529 aa20.13■□□□□ 0.81
COPS3-201ENST00000268717 WDR63Q8IWG1 891 aa20.13■□□□□ 0.81
COPS3-201ENST00000268717 RCAN3Q9UKA8 241 aa20.13■□□□□ 0.81
COPS3-201ENST00000268717 LMO7Q8WWI1 1683 aa20.13■□□□□ 0.81
COPS3-201ENST00000268717 RRS1Q15050 365 aaKnown RBP20.13■□□□□ 0.81
COPS3-201ENST00000268717 MAPK8IP3Q9UPT6 1336 aa20.12■□□□□ 0.81
COPS3-201ENST00000268717 PPM1GO15355 546 aaPredicted RBP20.12■□□□□ 0.81
COPS3-201ENST00000268717 FLT4P35916 1363 aa20.1■□□□□ 0.81
COPS3-201ENST00000268717 RSPH6AQ9H0K4 717 aa20.1■□□□□ 0.81
COPS3-201ENST00000268717 CCDC9Q9Y3X0 531 aaKnown RBP20.1■□□□□ 0.81
COPS3-201ENST00000268717 CAMTA1Q9Y6Y1 1673 aa20.09■□□□□ 0.81
COPS3-201ENST00000268717 BRWD3Q6RI45 1802 aa20.09■□□□□ 0.81
COPS3-201ENST00000268717 EP400Q96L91 3159 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 PEAK1Q9H792 1746 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 NEFMP07197 916 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 TMPOP42166 694 aaKnown RBP20.07■□□□□ 0.8
COPS3-201ENST00000268717 KCNH5Q8NCM2 988 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 COL18A1P39060 1754 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 MAP3K19Q56UN5 1328 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 NFAT5O94916 1531 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 RTL1A6NKG5 1358 aa20.07■□□□□ 0.8
COPS3-201ENST00000268717 ONECUT3O60422 494 aaPredicted RBP20.06■□□□□ 0.8
COPS3-201ENST00000268717 RRP1P56182 461 aaKnown RBP20.06■□□□□ 0.8
COPS3-201ENST00000268717 SPATA31A5Q5VU36 1347 aa20.06■□□□□ 0.8
COPS3-201ENST00000268717 SPATA31A7Q8IWB4 1347 aa20.06■□□□□ 0.8
COPS3-201ENST00000268717 UPF1Q92900 1129 aaKnown RBP eCLIP20.05■□□□□ 0.8
COPS3-201ENST00000268717 STRN4Q9NRL3 753 aa20.05■□□□□ 0.8
COPS3-201ENST00000268717 IL16Q14005 1332 aa20.05■□□□□ 0.8
COPS3-201ENST00000268717 EIF4A2Q14240 407 aaKnown RBP20.05■□□□□ 0.8
COPS3-201ENST00000268717 PRKAR2BP31323 418 aa20.04■□□□□ 0.8
COPS3-201ENST00000268717 SEPT12Q8IYM1 358 aa20.04■□□□□ 0.8
COPS3-201ENST00000268717 SPINK5Q9NQ38 1064 aaPredicted RBP20.04■□□□□ 0.8
COPS3-201ENST00000268717 RRP7AQ9Y3A4 280 aaKnown RBP20.04■□□□□ 0.8
COPS3-201ENST00000268717 RGPD5Q99666 1765 aa20.04■□□□□ 0.8
COPS3-201ENST00000268717 COL5A2P05997 1499 aaPredicted RBP20.03■□□□□ 0.8
COPS3-201ENST00000268717 ARHGEF25Q86VW2 580 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms