RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 CCAR1Q8IX12 1150 aaKnown RBP22.28■■□□□ 1.16
SMARCC1-201ENST00000254480 CCDC57Q2TAC2 916 aa22.28■■□□□ 1.16
SMARCC1-201ENST00000254480 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.28■■□□□ 1.16
SMARCC1-201ENST00000254480 SLC3A2P08195 630 aaKnown RBP22.27■■□□□ 1.16
SMARCC1-201ENST00000254480 USHBP1Q8N6Y0 703 aa22.27■■□□□ 1.16
SMARCC1-201ENST00000254480 CYP46A1Q9Y6A2 500 aa22.27■■□□□ 1.16
SMARCC1-201ENST00000254480 WAPLQ7Z5K2 1190 aa22.27■■□□□ 1.16
SMARCC1-201ENST00000254480 ATF7IPQ6VMQ6 1270 aa22.27■■□□□ 1.15
SMARCC1-201ENST00000254480 SKAP1Q86WV1 359 aa22.27■■□□□ 1.15
SMARCC1-201ENST00000254480 ERBINQ96RT1 1412 aa22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 GRIN2BQ13224 1484 aa22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 NUTM1Q86Y26 1132 aa22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 SPG7Q9UQ90 795 aa22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 TSPY26PQ9H489 355 aa22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 MCM10Q7L590 875 aa22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 CCT4P50991 539 aaKnown RBP22.26■■□□□ 1.15
SMARCC1-201ENST00000254480 GNL3LQ9NVN8 582 aaKnown RBP22.25■■□□□ 1.15
SMARCC1-201ENST00000254480 BRPF3Q9ULD4 1205 aa22.25■■□□□ 1.15
SMARCC1-201ENST00000254480 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.25■■□□□ 1.152e-7■■□□□ 11.9
SMARCC1-201ENST00000254480 HIP1O00291 1037 aa22.25■■□□□ 1.15
SMARCC1-201ENST00000254480 RABEP1Q15276 862 aa22.25■■□□□ 1.15
SMARCC1-201ENST00000254480 PTCD1O75127 700 aaKnown RBP22.25■■□□□ 1.15
SMARCC1-201ENST00000254480 AAMPQ13685 434 aa22.24■■□□□ 1.15
SMARCC1-201ENST00000254480 TEX35Q5T0J7 233 aa22.24■■□□□ 1.15
SMARCC1-201ENST00000254480 ME1P48163 572 aa22.24■■□□□ 1.15
SMARCC1-201ENST00000254480 MRE11P49959 708 aa22.24■■□□□ 1.15
SMARCC1-201ENST00000254480 CCDC39Q9UFE4 941 aa22.24■■□□□ 1.15
SMARCC1-201ENST00000254480 PDE3AQ14432 1141 aa22.24■■□□□ 1.15
SMARCC1-201ENST00000254480 CCDC69A6NI79 296 aa22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 PNISRQ8TF01 805 aaKnown RBP22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 ZNF692Q9BU19 519 aaPredicted RBP22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 MVPQ14764 893 aaKnown RBP22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 KIAA1107Q9UPP5 1409 aa22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 EXOC6BQ9Y2D4 811 aa22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 CHD1LQ86WJ1 897 aa22.23■■□□□ 1.15
SMARCC1-201ENST00000254480 ZSCAN29Q8IWY8 852 aaPredicted RBP22.22■■□□□ 1.15
SMARCC1-201ENST00000254480 MAGEC2Q9UBF1 373 aaPredicted RBP22.22■■□□□ 1.15
SMARCC1-201ENST00000254480 SMARCA5O60264 1052 aaPredicted RBP22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 TXLNAP40222 546 aa22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 ZNF396Q96N95 335 aaPredicted RBP22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 FAM177A1Q8N128 213 aaPredicted RBP22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 AK7Q96M32 723 aa22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 JAKMIP1Q96N16 626 aaKnown RBP22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 RAI14Q9P0K7 980 aa22.21■■□□□ 1.15
SMARCC1-201ENST00000254480 ANKLE2Q86XL3 938 aa22.2■■□□□ 1.14
SMARCC1-201ENST00000254480 PDCP20941 246 aa22.2■■□□□ 1.14
SMARCC1-201ENST00000254480 ARGLU1Q9NWB6 273 aaPredicted RBP22.2■■□□□ 1.14
SMARCC1-201ENST00000254480 IDH1O75874 414 aaKnown RBP22.2■■□□□ 1.14
SMARCC1-201ENST00000254480 SERPINC1P01008 464 aa22.2■■□□□ 1.14
SMARCC1-201ENST00000254480 IBSPP21815 317 aaPredicted RBP22.19■■□□□ 1.14
SMARCC1-201ENST00000254480 LARP1BQ659C4 914 aaKnown RBP22.19■■□□□ 1.14
SMARCC1-201ENST00000254480 TMEM57Q8N5G2 664 aa22.19■■□□□ 1.14
SMARCC1-201ENST00000254480 TDO2P48775 406 aa22.19■■□□□ 1.14
SMARCC1-201ENST00000254480 SF3B2Q13435 895 aaKnown RBP22.19■■□□□ 1.14
SMARCC1-201ENST00000254480 NACAP1Q9BZK3 213 aa22.19■■□□□ 1.14
SMARCC1-201ENST00000254480 DDX11Q96FC9 970 aa22.18■■□□□ 1.14
SMARCC1-201ENST00000254480 SSBP05455 408 aaKnown RBP eCLIP22.18■■□□□ 1.14
SMARCC1-201ENST00000254480 NUDT16Q96DE0 195 aaKnown RBP22.18■■□□□ 1.14
SMARCC1-201ENST00000254480 ABCF2Q9UG63 623 aa22.18■■□□□ 1.14
SMARCC1-201ENST00000254480 FILIP1LQ4L180 1135 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 HSP90B2PQ58FF3 399 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 TANGO6Q9C0B7 1094 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 PAF1Q8N7H5 531 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 NSD3Q9BZ95 1437 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 TRIM22Q8IYM9 498 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 TNMDQ9H2S6 317 aa22.17■■□□□ 1.14
SMARCC1-201ENST00000254480 K7ELQ4 463 aaPredicted RBP22.16■■□□□ 1.14
SMARCC1-201ENST00000254480 RBM10P98175 930 aaKnown RBP22.16■■□□□ 1.14
SMARCC1-201ENST00000254480 WDR63Q8IWG1 891 aa22.16■■□□□ 1.14
SMARCC1-201ENST00000254480 LRP2BPQ9P2M1 347 aa22.16■■□□□ 1.14
SMARCC1-201ENST00000254480 MBD3O95983 291 aa22.16■■□□□ 1.14
SMARCC1-201ENST00000254480 PDRG1Q9NUG6 133 aa22.16■■□□□ 1.14
SMARCC1-201ENST00000254480 CEP126Q9P2H0 1117 aa22.15■■□□□ 1.14
SMARCC1-201ENST00000254480 SYNJ1O43426 1573 aa22.15■■□□□ 1.14
SMARCC1-201ENST00000254480 MCM2P49736 904 aa22.15■■□□□ 1.14
SMARCC1-201ENST00000254480 HFM1A2PYH4 1435 aa22.15■■□□□ 1.14
SMARCC1-201ENST00000254480 BLOC1S2Q6QNY1 142 aa22.15■■□□□ 1.14
SMARCC1-201ENST00000254480 TMPOP42166 694 aaKnown RBP22.15■■□□□ 1.14
SMARCC1-201ENST00000254480 CCDC173Q0VFZ6 552 aa22.14■■□□□ 1.14
SMARCC1-201ENST00000254480 USP5P45974 858 aa22.14■■□□□ 1.13
SMARCC1-201ENST00000254480 SLC52A1Q9NWF4 448 aa22.14■■□□□ 1.13
SMARCC1-201ENST00000254480 GNAT3A8MTJ3 354 aa22.13■■□□□ 1.13
SMARCC1-201ENST00000254480 LETM1O95202 739 aaPredicted RBP22.13■■□□□ 1.13
SMARCC1-201ENST00000254480 SYCP1Q15431 976 aa22.13■■□□□ 1.13
SMARCC1-201ENST00000254480 DUSP27Q5VZP5 1158 aa22.12■■□□□ 1.13
SMARCC1-201ENST00000254480 SOGA3Q5TF21 947 aa22.12■■□□□ 1.13
SMARCC1-201ENST00000254480 SMARCE1Q969G3 411 aa22.12■■□□□ 1.13
SMARCC1-201ENST00000254480 BACH2Q9BYV9 841 aa22.12■■□□□ 1.13
SMARCC1-201ENST00000254480 F6X3S4 739 aa22.12■■□□□ 1.13
SMARCC1-201ENST00000254480 PDCL3Q9H2J4 239 aa22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 ADAMTS2O95450 1211 aa22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 NME9Q86XW9 330 aa22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 UBAC1Q9BSL1 405 aa22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 CASTP20810 708 aaKnown RBP22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 NFE2L2Q16236 605 aa22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 FERMT3Q86UX7 667 aa22.11■■□□□ 1.13
SMARCC1-201ENST00000254480 C11orf95C9JLR9 678 aaPredicted RBP22.1■■□□□ 1.13
SMARCC1-201ENST00000254480 SNAPC4Q5SXM2 1469 aa22.1■■□□□ 1.13
SMARCC1-201ENST00000254480 MPHOSPH10O00566 681 aaKnown RBP22.1■■□□□ 1.13
SMARCC1-201ENST00000254480 MYD88Q99836 296 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms