RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 FAM182BQ5T319 152 aa14.9□□□□□ -0.02
VPS50-201ENST00000251739 REM2Q8IYK8 340 aaPredicted RBP14.9□□□□□ -0.02
VPS50-201ENST00000251739 ABTB2Q8N961 1025 aa14.9□□□□□ -0.02
VPS50-201ENST00000251739 CABP2Q9NPB3 220 aa14.9□□□□□ -0.02
VPS50-201ENST00000251739 MON2Q7Z3U7 1717 aa14.89□□□□□ -0.03
VPS50-201ENST00000251739 BARGINQ6ZT62 677 aa14.89□□□□□ -0.03
VPS50-201ENST00000251739 NUP188Q5SRE5 1749 aa14.89□□□□□ -0.03
VPS50-201ENST00000251739 LRRC37A3O60309 1634 aa14.88□□□□□ -0.03
VPS50-201ENST00000251739 USP54Q70EL1 1684 aa14.88□□□□□ -0.03
VPS50-201ENST00000251739 STRN4Q9NRL3 753 aa14.88□□□□□ -0.03
VPS50-201ENST00000251739 SBF2Q86WG5 1849 aa14.87□□□□□ -0.03
VPS50-201ENST00000251739 GCP02774 474 aa14.87□□□□□ -0.03
VPS50-201ENST00000251739 NLRP13Q86W25 1043 aa14.87□□□□□ -0.03
VPS50-201ENST00000251739 RGPD3A6NKT7 1758 aaPredicted RBP14.87□□□□□ -0.03
VPS50-201ENST00000251739 RGPD4Q7Z3J3 1758 aa14.87□□□□□ -0.03
VPS50-201ENST00000251739 RGPD5Q99666 1765 aa14.87□□□□□ -0.03
VPS50-201ENST00000251739 EN1Q05925 392 aaPredicted RBP14.86□□□□□ -0.03
VPS50-201ENST00000251739 LARP1Q6PKG0 1096 aaKnown RBP14.86□□□□□ -0.03
VPS50-201ENST00000251739 CABP1Q9NZU7 370 aa14.86□□□□□ -0.03
VPS50-201ENST00000251739 AATKQ6ZMQ8 1374 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 PARD3Q8TEW0 1356 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 SBNO2Q9Y2G9 1366 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 CRB1P82279 1406 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 FAM196AQ6ZSG2 479 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 SIN3AQ96ST3 1273 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 NFAT5O94916 1531 aa14.85□□□□□ -0.03
VPS50-201ENST00000251739 CPSF1Q10570 1443 aaKnown RBP14.84□□□□□ -0.03
VPS50-201ENST00000251739 TCP11L2Q8N4U5 519 aa14.84□□□□□ -0.03
VPS50-201ENST00000251739 EVC2Q86UK5 1308 aa14.84□□□□□ -0.03
VPS50-201ENST00000251739 ROCK2O75116 1388 aaKnown RBP14.84□□□□□ -0.03
VPS50-201ENST00000251739 ABCC6O95255 1503 aa14.83□□□□□ -0.04
VPS50-201ENST00000251739 PSDA5PKW4 1024 aaPredicted RBP14.83□□□□□ -0.04
VPS50-201ENST00000251739 CAMKK2Q96RR4 588 aa14.83□□□□□ -0.04
VPS50-201ENST00000251739 THRAP3Q9Y2W1 955 aaKnown RBP14.83□□□□□ -0.04
VPS50-201ENST00000251739 USP35Q9P2H5 1018 aa14.82□□□□□ -0.04
VPS50-201ENST00000251739 TRIM37O94972 964 aa14.81□□□□□ -0.04
VPS50-201ENST00000251739 EVA1CP58658 441 aa14.81□□□□□ -0.04
VPS50-201ENST00000251739 NLRP6P59044 892 aa14.81□□□□□ -0.04
VPS50-201ENST00000251739 EZH2Q15910 746 aaKnown RBP14.81□□□□□ -0.04
VPS50-201ENST00000251739 TTC21BQ7Z4L5 1316 aa14.8□□□□□ -0.04
VPS50-201ENST00000251739 CD163L1Q9NR16 1453 aa14.8□□□□□ -0.04
VPS50-201ENST00000251739 OVOS2A0A0G2JMS6 1433 aa14.79□□□□□ -0.04
VPS50-201ENST00000251739 OVOS2A0A0J9YW53 1432 aa14.79□□□□□ -0.04
VPS50-201ENST00000251739 OVOS2Q6IE36 1432 aa14.79□□□□□ -0.04
VPS50-201ENST00000251739 TTC21AQ8NDW8 1320 aa14.79□□□□□ -0.04
VPS50-201ENST00000251739 SPDYE1Q8NFV5 336 aaPredicted RBP14.79□□□□□ -0.04
VPS50-201ENST00000251739 LTN1O94822 1766 aa14.78□□□□□ -0.04
VPS50-201ENST00000251739 PDE3BQ13370 1112 aa14.78□□□□□ -0.04
VPS50-201ENST00000251739 R3HDM1Q15032 1099 aaKnown RBP14.78□□□□□ -0.04
VPS50-201ENST00000251739 WDR17Q8IZU2 1322 aa14.77□□□□□ -0.04
VPS50-201ENST00000251739 ARHGEF25Q86VW2 580 aa14.77□□□□□ -0.05
VPS50-201ENST00000251739 AXIN2Q9Y2T1 843 aa14.77□□□□□ -0.05
VPS50-201ENST00000251739 BCL9O00512 1426 aa14.76□□□□□ -0.05
VPS50-201ENST00000251739 APBA3O96018 575 aa14.76□□□□□ -0.05
VPS50-201ENST00000251739 NEUROD1Q13562 356 aa14.76□□□□□ -0.05
VPS50-201ENST00000251739 USP31Q70CQ4 1352 aa14.75□□□□□ -0.05
VPS50-201ENST00000251739 KTN1Q86UP2 1357 aaKnown RBP14.75□□□□□ -0.05
VPS50-201ENST00000251739 C11orf95C9JLR9 678 aaPredicted RBP14.75□□□□□ -0.05
VPS50-201ENST00000251739 KCNH5Q8NCM2 988 aa14.74□□□□□ -0.05
VPS50-201ENST00000251739 FBXO3Q9UK99 471 aa14.74□□□□□ -0.05
VPS50-201ENST00000251739 CASZ1Q86V15 1759 aa14.74□□□□□ -0.05
VPS50-201ENST00000251739 PITPNM1O00562 1244 aa14.73□□□□□ -0.05
VPS50-201ENST00000251739 TOM1L2Q6ZVM7 507 aa14.72□□□□□ -0.05
VPS50-201ENST00000251739 NHSQ6T4R5 1651 aa14.71□□□□□ -0.05
VPS50-201ENST00000251739 ZBTB7CA1YPR0 619 aa14.71□□□□□ -0.05
VPS50-201ENST00000251739 DDB1Q16531 1140 aa14.71□□□□□ -0.05
VPS50-201ENST00000251739 CARD10Q9BWT7 1032 aa14.71□□□□□ -0.05
VPS50-201ENST00000251739 TNS2Q63HR2 1409 aa14.71□□□□□ -0.05
VPS50-201ENST00000251739 EDC4Q6P2E9 1401 aaKnown RBP14.71□□□□□ -0.05
VPS50-201ENST00000251739 MARCH10Q8NA82 808 aaPredicted RBP14.7□□□□□ -0.06
VPS50-201ENST00000251739 CDCA7Q9BWT1 371 aaPredicted RBP14.7□□□□□ -0.06
VPS50-201ENST00000251739 CARD11Q9BXL7 1154 aa14.7□□□□□ -0.06
VPS50-201ENST00000251739 CCDC7Q96M83 1385 aa14.7□□□□□ -0.06
VPS50-201ENST00000251739 FAM208AQ9UK61 1670 aaKnown RBP14.69□□□□□ -0.06
VPS50-201ENST00000251739 PLSCR1O15162 318 aa14.68□□□□□ -0.06
VPS50-201ENST00000251739 PTF1AQ7RTS3 328 aa14.68□□□□□ -0.06
VPS50-201ENST00000251739 PUS7Q96PZ0 661 aaKnown RBP14.68□□□□□ -0.06
VPS50-201ENST00000251739 CLEC11AQ9Y240 323 aa14.68□□□□□ -0.06
VPS50-201ENST00000251739 A0A1W2PP64 1363 aa14.68□□□□□ -0.06
VPS50-201ENST00000251739 TONSLQ96HA7 1378 aa14.68□□□□□ -0.06
VPS50-201ENST00000251739 ERBB3P21860 1342 aa14.67□□□□□ -0.06
VPS50-201ENST00000251739 SOX12O15370 315 aa14.67□□□□□ -0.06
VPS50-201ENST00000251739 NME9Q86XW9 330 aa14.67□□□□□ -0.06
VPS50-201ENST00000251739 BCL11BQ9C0K0 894 aaPredicted RBP14.67□□□□□ -0.06
VPS50-201ENST00000251739 TESK2Q96S53 571 aa14.66□□□□□ -0.06
VPS50-201ENST00000251739 PAPPAQ13219 1627 aa14.66□□□□□ -0.06
VPS50-201ENST00000251739 NINLQ9Y2I6 1382 aa14.65□□□□□ -0.06
VPS50-201ENST00000251739 BTAF1O14981 1849 aa14.65□□□□□ -0.06
VPS50-201ENST00000251739 NBPF14Q5TI25 921 aa14.65□□□□□ -0.06
VPS50-201ENST00000251739 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.65□□□□□ -0.06
VPS50-201ENST00000251739 SLC12A5Q9H2X9 1139 aa14.65□□□□□ -0.06
VPS50-201ENST00000251739 ANO8Q9HCE9 1232 aaPredicted RBP14.65□□□□□ -0.06
VPS50-201ENST00000251739 CSB-PGBD3P0DP91 1061 aa14.63□□□□□ -0.07
VPS50-201ENST00000251739 SHANK3Q9BYB0 1731 aa14.63□□□□□ -0.07
VPS50-201ENST00000251739 HDGFL2Q7Z4V5 671 aaPredicted RBP14.62□□□□□ -0.07
VPS50-201ENST00000251739 TERF2IPQ9NYB0 399 aa14.62□□□□□ -0.07
VPS50-201ENST00000251739 RGPD2P0DJD1 1756 aa14.62□□□□□ -0.07
VPS50-201ENST00000251739 TMC1Q8TDI8 760 aa14.61□□□□□ -0.07
VPS50-201ENST00000251739 KAT6BQ8WYB5 2073 aa14.61□□□□□ -0.07
VPS50-201ENST00000251739 EXOC5O00471 708 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms