RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 A0A1B0GV90 55 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 E9PI62 339 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 AGRPO00253 132 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DCXO43602 365 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FMO6PO60774 539 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PSAPP07602 524 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ETS1P14921 441 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NR1D1P20393 614 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MARK3P27448 753 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GSTM2P28161 218 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ARSDP51689 593 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CCDC85BQ15834 202 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 KLHL12Q53G59 568 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TRIQKQ629K1 86 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DPY19L2Q6NUT2 758 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SLC30A10Q6XR72 485 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SFR1Q86XK3 245 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 MINDY1Q8N5J2 469 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 AOPEPQ8N6M6 819 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 BHLHE22Q8NFJ8 381 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FAR2Q96K12 515 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF416Q9BWM5 594 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SOHLH2Q9NX45 425 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ENTPD4Q9Y227 616 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ANKRD36BQ8N2N9 1353 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ABCA2Q9BZC7 2435 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 THADAQ6YHU6 1953 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FUOMA2VDF0 154 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 A6NHS1 94 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGEF33A8MVX0 844 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PDE8BO95263 885 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CYP2F1P24903 491 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 S100A2P29034 98 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 YWHAGP61981 247 aaKnown RBP eCLIP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 YWHAZP63104 245 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DLG4P78352 724 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CTAG1AP78358 180 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RBL2Q08999 1139 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GPR158Q5T848 1215 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TTI2Q6NXR4 508 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 IQCHQ86VS3 1027 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FANCBQ8NB91 859 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TRPC4APQ8TEL6 797 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 UTP4Q969X6 686 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TMCO6Q96DC7 493 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PPP1R10Q96QC0 940 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DHRS4Q9BTZ2 278 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ADGRE3Q9BY15 652 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 C6orf62Q9GZU0 229 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GBA3Q9H227 469 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GAL3ST2Q9H3Q3 398 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZCCHC3Q9NUD5 404 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PTTG2Q9NZH5 202 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CADP27708 2225 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TEX13CA0A0J9YWL9 993 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ATMINO43313 823 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 FGF4P08620 206 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 F7P08709 466 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CTSHP09668 335 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ARCN1P48444 511 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 VAV2P52735 878 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 DSC2Q02487 901 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 PARP6Q2NL67 630 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RARS2Q5T160 578 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 NBPF12Q5TAG4 269 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 HHIPL2Q6UWX4 724 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 AGBL3Q8NEM8 1001 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 LINS1Q8NG48 757 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZNF398Q8TD17 642 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 GRHL3Q8TE85 626 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 CLIC6Q96NY7 704 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 SLC25A23Q9BV35 468 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 RIOK2Q9BVS4 552 aaKnown RBP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 ZFYVE28Q9HCC9 887 aa3.6□□□□□ -1.83
SCN1A-221ENST00000641996 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.6□□□□□ -1.83
SCN1A-221ENST00000641996 TNIKQ9UKE5 1360 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PPP1R3GB7ZBB8 358 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 C2CD2LO14523 706 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PPEF1O14829 653 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PGRMC2O15173 223 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 COX4I1P13073 169 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CYP2A7P20853 494 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PIK3R1P27986 724 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 NOS3P29474 1203 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 CDC25AP30304 524 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ARRB1P49407 418 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 SELENOVP59797 346 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 GPR153Q6NV75 609 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 C6orf15Q6UXA7 325 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 DCXRQ7Z4W1 244 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 LURAP1LQ8IV03 231 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 LRRC8AQ8IWT6 810 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 FAM20AQ96MK3 541 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 PRRX2Q99811 253 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TCF25Q9BQ70 676 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 MRPS26Q9BYN8 205 aaKnown RBP3.59□□□□□ -1.83
SCN1A-221ENST00000641996 OSBPL8Q9BZF1 889 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 TUBB1Q9H4B7 451 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 ARHGAP20Q9P2F6 1191 aa3.59□□□□□ -1.83
SCN1A-221ENST00000641996 STK17AQ9UEE5 414 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms