RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TBC1D3HP0C7X1 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TIMP2P16035 220 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 NFKB1P19838 968 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 NFKBIAP25963 317 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 STIP1P31948 543 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 DHPSP49366 369 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TRAF2Q12933 501 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 SLC14A2Q15849 920 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 ARMC12Q5T9G4 340 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 PMS2CLQ68D20 193 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3GQ6DHY5 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3CQ6IPX1 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 ERAP2Q6P179 960 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 SYT10Q6XYQ8 523 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TMEFF1Q8IYR6 380 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3Q8IZP1 549 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 ECHDC3Q96DC8 303 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 C16orf45Q96MC5 204 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 NSMCE3Q96MG7 304 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 SPATA13Q96N96 652 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 PREBQ9HCU5 417 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 PCDHB9Q9Y5E1 797 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TRPM6Q9BX84 2022 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 PRR23AA6NEV1 266 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 C5orf60A6NFR6 353 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 MEI4A8MW99 385 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ZNF185O15231 689 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 AP1G1O43747 822 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 PCDH8O95206 1070 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ITGAVP06756 1048 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 CD68P34810 354 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 SKOR1P84550 965 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 FOXK2Q01167 660 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ELP6Q0PNE2 266 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 OASLQ15646 514 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 UGP2Q16851 508 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ANKRD20A2Q5SQ80 823 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ANKRD20A1Q5TYW2 823 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ANKRD20A3Q5VUR7 823 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 DRICH1Q6PGQ1 229 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 ARHGEF18Q6ZSZ5 1173 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 NYAP1Q6ZVC0 841 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 NDUFAF2Q8N183 169 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 DEFB119Q8N690 84 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 PPP1R2P1Q96PQ5 205 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 FCRL5Q96RD9 977 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 RBM15Q96T37 977 aaKnown RBP eCLIP19.26■□□□□ 0.671e-7■■□□□ 13.5
SQSTM1-216ENST00000626660 GBA3Q9H227 469 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 C6orf106Q9H6K1 298 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 TPX2Q9ULW0 747 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 DRG1Q9Y295 367 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 FADS3Q9Y5Q0 445 aa19.26■□□□□ 0.67
SQSTM1-216ENST00000626660 TSPAN6O43657 245 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 FSBPO95073 299 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 PGLSO95336 258 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 MMP2P08253 660 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 ACTN2P35609 894 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 ABL2P42684 1182 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 TNNT3P45378 269 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 EPHB1P54762 984 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 TAS2R38P59533 333 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 PRPSAP1Q14558 356 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 LPAL2Q16609 132 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 WDR45BQ5MNZ6 344 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 FAM182AQ5T1J6 154 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 SYCP2LQ5T4T6 812 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 LYSMD4Q5XG99 296 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 KIAA0895LQ68EN5 471 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 LAIR1Q6GTX8 287 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 NEK5Q6P3R8 708 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 ARMCX6Q7L4S7 300 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 PRPF39Q86UA1 669 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 PRELID2Q8N945 189 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 CCDC110Q8TBZ0 833 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 SPOCK2Q92563 424 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 LOXL4Q96JB6 756 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 CAPZA3Q96KX2 299 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 HSPA12BQ96MM6 686 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 AP1M1Q9BXS5 423 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 TDRD1Q9BXT4 1180 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 PCDH9Q9HC56 1237 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 VPS45Q9NRW7 570 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 SMARCAL1Q9NZC9 954 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 FAM153AQ9UHL3 310 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 PHTF1Q9UMS5 762 aa19.25■□□□□ 0.67
SQSTM1-216ENST00000626660 METTL12A8MUP2 240 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 F5H423 210 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 KIF2AO00139 706 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 GCATO75600 419 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 ANXA9O76027 345 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 IFNB1P01574 187 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 TUBB4AP04350 444 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 PAFAH1B1P43034 410 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 CCR5P51681 352 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 RPL26P61254 145 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 P3H1Q32P28 736 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 LRRC73Q5JTD7 316 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 GSTA5Q7RTV2 222 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 ZSCAN30Q86W11 494 aa19.24■□□□□ 0.67
SQSTM1-216ENST00000626660 ZSWIM9Q86XI8 627 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms