RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ERN2Q76MJ5 926 aaKnown RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 VSIG1Q86XK7 387 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 RFX6Q8HWS3 928 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 PSTKQ8IV42 348 aaKnown RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 MFSD2AQ8NA29 543 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 RHBDD1Q8TEB9 315 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 SETD7Q8WTS6 366 aaKnown RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 C1orf54Q8WWF1 131 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 CASKIN2Q8WXE0 1202 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 ATG4AQ8WYN0 398 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 LRIG1Q96JA1 1093 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 CAMK1GQ96NX5 476 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 KRT12Q99456 494 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 ELF4Q99607 663 aaPredicted RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 EPAS1Q99814 870 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 HEPHQ9BQS7 1158 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 HDAC8Q9BY41 377 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 ERVMER34-1Q9H9K5 563 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 GDF3Q9NR23 364 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 APOBEC2Q9Y235 224 aaKnown RBP12.83□□□□□ -0.36
PNKP-217ENST00000625216 EFR3BQ9Y2G0 817 aa12.83□□□□□ -0.36
PNKP-217ENST00000625216 CHD8Q9HCK8 2581 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 KNL1Q8NG31 2342 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 GOLGA6L10A0A0M3HER8 536 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 A0A1B0GTQ1 180 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 WASH4PA8MWX3 477 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 PRAMEF26H0Y7S4 382 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 H0Y8X5 98 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 TLR4O00206 839 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 PLK4O00444 970 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 YKT6O15498 198 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 KDELR3O43731 214 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 EPHB2P29323 1055 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 ACVRL1P37023 503 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 GRK6P43250 576 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 TERF1P54274 439 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 PPP2CBP62714 309 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 DYNLT1P63172 113 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 PPP2CAP67775 309 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 FAM193AP78312 1265 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 STAT4Q14765 748 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 SETMARQ53H47 684 aaPredicted RBP12.82□□□□□ -0.36
PNKP-217ENST00000625216 PIP5KL1Q5T9C9 394 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 OXR1Q8N573 874 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 PQLC3Q8N755 202 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 RTL3Q8N8U3 475 aaKnown RBP12.82□□□□□ -0.36
PNKP-217ENST00000625216 CHST14Q8NCH0 376 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 PCDH19Q8TAB3 1148 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 MAIP1Q8WWC4 291 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 HAUS1Q96CS2 278 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 CSPG4P5Q96PW8 444 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 RNF157Q96PX1 679 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 FAM118BQ9BPY3 351 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 SCNM1Q9BWG6 230 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 TNKS2Q9H2K2 1166 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 CATSPERBQ9H7T0 1116 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 ANKZF1Q9H8Y5 726 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 NDFIP2Q9NV92 336 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 CWC15Q9P013 229 aaKnown RBP12.82□□□□□ -0.36
PNKP-217ENST00000625216 NEU3Q9UQ49 428 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 NEUROG3Q9Y4Z2 214 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 EPG5Q9HCE0 2579 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 CEP295Q9C0D2 2601 aa12.82□□□□□ -0.36
PNKP-217ENST00000625216 NYNRINQ9P2P1 1898 aaKnown RBP12.82□□□□□ -0.36
PNKP-217ENST00000625216 FAM221BA6H8Z2 402 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 FGF10O15520 208 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 RAD51CO43502 376 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 CST8O60676 142 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 LEFTY1O75610 366 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 TJP3O95049 919 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 CD160O95971 181 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 GSRP00390 522 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 WNT1P04628 370 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 RHOXF2BP0C7M4 288 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 PECAM1P16284 738 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 ARRB1P49407 418 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 CCNHP51946 323 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 NEK3P51956 506 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 NXPH1P58417 271 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 TAS2R38P59533 333 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 SNRPD1P62314 119 aaKnown RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 KCTD19Q17RG1 926 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 POM121L1PQ3SYA9 428 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 PARP15Q460N3 678 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 INO80DQ53TQ3 878 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 ANKRD20A8PQ5CZ79 823 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 SLC9A4Q6AI14 798 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 C8orf74Q6P047 294 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 LAYNQ6UX15 382 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 NPNTQ6UXI9 565 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 RAB44Q7Z6P3 723 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 HORMAD1Q86X24 394 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 MAP7D3Q8IWC1 876 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 PLD5Q8N7P1 536 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 BAHD1Q8TBE0 780 aaPredicted RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 FAM174AQ8TBP5 190 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 ADAMTS14Q8WXS8 1223 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 UBXN4Q92575 508 aa12.81□□□□□ -0.36
PNKP-217ENST00000625216 MAGOHBQ96A72 148 aaKnown RBP12.81□□□□□ -0.36
PNKP-217ENST00000625216 ARRDC3Q96B67 414 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms