RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 C17orf62Q9BQA9 187 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 INO80BQ9C086 356 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ANKRA2Q9H9E1 313 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ARHGAP20Q9P2F6 1191 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SLIT1O75093 1534 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PRR5-ARHGAP8B1AHC4 643 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 H3BNH8 94 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PVALBP20472 110 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FECHP22830 423 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GRIA3P42263 894 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RPS9P46781 194 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ARHGAP8P85298 464 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 HNRNPDQ14103 355 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 INTS11Q5TA45 600 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FAM131AQ6UXB0 335 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ALYREFQ86V81 257 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CMTR1Q8N1G2 835 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SEC14L1Q92503 715 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF175Q9Y473 711 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 MTF2Q9Y483 593 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TLL2Q9Y6L7 1015 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 NPM3O75607 178 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SLITRK5O94991 958 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 LDOC1O95751 146 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RPS3P23396 243 aaKnown RBP eCLIP4.98□□□□□ -1.614e-6■■■■■ 40.4
VPS13D-213ENST00000613099 PPP5CP53041 499 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 OXR1Q8N573 874 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FAM136AQ96C01 138 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 AURKBQ96GD4 344 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZYG11BQ9C0D3 744 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 POMPQ9Y244 141 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TO15178 435 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PBX1P40424 430 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CIAPIN1Q6FI81 312 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RASGEF1CQ8N431 466 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF366Q8N895 744 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SPATA18Q8TC71 538 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 INTS10Q9NVR2 710 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PLLPQ9Y342 182 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 IFNA17P01571 189 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GMPRP36959 345 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CDKN2CP42773 168 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RAB5CP51148 216 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 MGAT5Q09328 741 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 LSM12Q3MHD2 195 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 LINC00299Q6ZSB3 139 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SLC15A4Q8N697 577 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RFKQ969G6 155 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SLC29A1Q99808 456 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CCDC32Q9BV29 185 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TGFB3P10600 412 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 STOMP27105 288 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 MAOBP27338 520 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RXRBP28702 533 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SLX4IPQ5VYV7 408 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 LPCAT1Q8NF37 534 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SGTBQ96EQ0 304 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF578Q96N58 590 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 IFT46Q9NQC8 304 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RAB6BQ9NRW1 208 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TBC1D13Q9NVG8 400 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PNMA8BQ9ULN7 279 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 DCDC2CA8MYV0 355 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 DHX15O43143 795 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 BCAS2O75934 225 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 HOXB1P14653 301 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 HOXB8P17481 243 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 MAZP56270 477 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FASTKQ14296 549 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 UGT2A3Q6UWM9 527 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SSX9Q7RTT3 188 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 KDM1BQ8NB78 822 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TRPM4Q8TD43 1214 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RIBC2Q9H4K1 309 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 KCNH4Q9UQ05 1017 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 DRG1Q9Y295 367 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 A0A088AWK7 358 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 S100A8P05109 93 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GPIP06744 558 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 POLBP06746 335 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TPRG1LQ5T0D9 272 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 NDUFAF5Q5TEU4 345 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 DCAF15Q66K64 600 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 UCK2Q9BZX2 261 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PRMT8Q9NR22 394 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 B3GNT2Q9NY97 397 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GMEB2Q9UKD1 530 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 G3V2T6 193 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 STX16-NPEPL1H3BU86 382 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 BCKDKO14874 412 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CD72P21854 359 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PSMA1P25786 263 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FMO5P49326 533 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CHAF1BQ13112 559 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GLRA4Q5JXX5 417 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CYP4Z2PQ8N1L4 340 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF540Q8NDQ6 660 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SPATA9Q9BWV2 254 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PRKCAP17252 672 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 XRCC1P18887 633 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms