RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 AGAP3Q96P47 875 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 HINFPQ9BQA5 517 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 EIF2B4Q9UI10 523 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 R3HDM2Q9Y2K5 976 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PIEZO1Q92508 2521 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 LATO43561 262 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 LRP3O75074 770 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 RBP3P10745 1247 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 RBL1P28749 1068 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 HOXD12P35452 270 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 DPP6P42658 865 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 SPEM2Q0P670 501 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 TRAF2Q12933 501 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 CCDC6Q16204 474 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 TRIM69Q86WT6 500 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 TEKT5Q96M29 485 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 ORAI3Q9BRQ5 295 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 C10orf88Q9H8K7 445 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 GGT7Q9UJ14 662 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 TPX2Q9ULW0 747 aaKnown RBP16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 ITM2BQ9Y287 266 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 RALGAPA1Q6GYQ0 2036 aa16.69■□□□□ 0.26
CCDC28A-202ENST00000611852 A0A1W2PQU0 124 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 UPK3BL1B0FP48 263 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 UPK3BL2E5RIL1 263 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 TSPAN6O43657 245 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 RNGTTO60942 597 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 PCDH8O95206 1070 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 SERPINF2P08697 491 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 ITIH2P19823 946 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 TGM1P22735 817 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 CD27P26842 260 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 CXCR5P32302 372 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 SUOXP51687 545 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 CDKL3Q8IVW4 592 aaPredicted RBP16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 C1orf216Q8TAB5 229 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 PDCD6IPQ8WUM4 868 aaKnown RBP16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 VAT1Q99536 393 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 EBF2Q9HAK2 575 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 RAI2Q9Y5P3 530 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 SLCO1B1Q9Y6L6 691 aa16.68■□□□□ 0.26
CCDC28A-202ENST00000611852 GVINP1Q7Z2Y8 2422 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 A0A1W2PPC4 97 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 NEMP1O14524 444 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 MMP2P08253 660 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 XPAP23025 273 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 MSNP26038 577 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 MAT2AP31153 395 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 POLR2LP62875 67 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 TMEM259Q4ZIN3 620 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 DARS2Q6PI48 645 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 HORMAD1Q86X24 394 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 ZNF567Q8N184 647 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC35B2Q8TB61 432 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 IMP4Q96G21 291 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 MIR1-1HGQ9H1L0 117 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 SMOC1Q9H4F8 434 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 GLOD4Q9HC38 313 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 PARD6AQ9NPB6 346 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 PCDH12Q9NPG4 1184 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 VPS45Q9NRW7 570 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 SEMA4GQ9NTN9 838 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 ZFR2Q9UPR6 939 aaKnown RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 PCDHB9Q9Y5E1 797 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 PTPRZ1P23471 2315 aaPredicted RBP16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 DOCK9Q9BZ29 2069 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 TRPM6Q9BX84 2022 aa16.67■□□□□ 0.26
CCDC28A-202ENST00000611852 PI4KAP42356 2102 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 A0A1W2PQ67 120 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 PATE3B3GLJ2 98 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 RIOK3O14730 519 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 FZD6O60353 706 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 PGLSO95336 258 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ATP1A1P05023 1023 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ZNF806P0C7X5 589 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 CD68P34810 354 aaPredicted RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 CD86P42081 329 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 SKOR1P84550 965 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ELP6Q0PNE2 266 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ZNF284Q2VY69 593 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ARMC12Q5T9G4 340 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 SEL1L3Q68CR1 1132 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 KIAA1161Q6NSJ0 714 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ADAT2Q7Z6V5 191 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 PRPF39Q86UA1 669 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ALYREFQ86V81 257 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 ZCCHC9Q8N567 271 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 PAF1Q8N7H5 531 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 FEM1CQ96JP0 617 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 TDRD1Q9BXT4 1180 aaKnown RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC25A51Q9H1U9 297 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 USP29Q9HBJ7 922 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 KCND1Q9NSA2 647 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 KLHL8Q9P2G9 620 aaPredicted RBP16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 SUSD2Q9UGT4 822 aa16.66■□□□□ 0.26
CCDC28A-202ENST00000611852 BCAT2O15382 392 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 KCNN4O15554 427 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 CEP104O60308 925 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 CPP00450 1065 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 FGGP02679 453 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms