RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 NCKIPSDQ9NZQ3 722 aa7.7□□□□□ -1.18
CUX1-219ENST00000606749 SPASTQ9UBP0 616 aa7.7□□□□□ -1.18
CUX1-219ENST00000606749 UBA2Q9UBT2 640 aaPredicted RBP7.7□□□□□ -1.18
CUX1-219ENST00000606749 PCDHB1Q9Y5F3 818 aa7.7□□□□□ -1.18
CUX1-219ENST00000606749 BPTFQ12830 3046 aa7.7□□□□□ -1.18
CUX1-219ENST00000606749 ASXL3Q9C0F0 2248 aa7.7□□□□□ -1.18
CUX1-219ENST00000606749 TSPAN11A1L157 253 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ARHGAP42A6NI28 874 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 TMEM110-MUSTN1A8MSY1 372 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 EIF3CLB5ME19 914 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 LMO7DNF2Z398 122 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 EEF2KO00418 725 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 RIOK3O14730 519 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 YY2O15391 372 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 LZTS3O60299 673 aaPredicted RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 USP12O75317 370 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 CSO75390 466 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 PALMO75781 387 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 MBD3O95983 291 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 MPOP05164 745 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 GZMAP12544 262 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 TSHRP16473 764 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 XPAP23025 273 aaPredicted RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 LSSP48449 732 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 CSNK1DP48730 415 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 PEX5P50542 639 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ADKP55263 362 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 PPARDQ03181 441 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ELP6Q0PNE2 266 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ACAP1Q15027 740 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 LRRC14Q15048 493 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 IRF4Q15306 451 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 NR0B2Q15466 257 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ISXQ2M1V0 245 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 WSCD2Q2TBF2 565 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ANO6Q4KMQ2 910 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 AFMIDQ63HM1 303 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 PPP1R2P3Q6NXS1 205 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 BRAT1Q6PJG6 821 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 MACC1Q6ZN28 852 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 CYP4V2Q6ZWL3 525 aaPredicted RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 EFL1Q7Z2Z2 1120 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 ZNF571Q7Z3V5 609 aaPredicted RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 CAMK1DQ8IU85 385 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 PHACTR4Q8IZ21 702 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 TSEN2Q8NCE0 465 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 MAPK15Q8TD08 544 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 TBATAQ96M53 351 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 NAP1L5Q96NT1 182 aaPredicted RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 TUBGCP5Q96RT8 1024 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 PEBP4Q96S96 227 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 EIF3CQ99613 913 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 NCAPGQ9BPX3 1015 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 BPIFA3Q9BQP9 254 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 SLC13A1Q9BZW2 595 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 TRIM7Q9C029 511 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 NAT10Q9H0A0 1025 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 DHX35Q9H5Z1 703 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 HAUS4Q9H6D7 363 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 PCDH12Q9NPG4 1184 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 TMEM63CQ9P1W3 806 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 APOBEC3BQ9UH17 382 aaKnown RBP7.69□□□□□ -1.18
CUX1-219ENST00000606749 PCSK1NQ9UHG2 260 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 AP4E1Q9UPM8 1137 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 COQ6Q9Y2Z9 468 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 ITPR1Q14643 2758 aa7.69□□□□□ -1.18
CUX1-219ENST00000606749 CFAP69A5D8W1 941 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 LRRC53A6NM62 1247 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 SMTNL1A8MU46 457 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 DDX3XO00571 662 aaKnown RBP eCLIP7.68□□□□□ -1.18
CUX1-219ENST00000606749 MUSKO15146 869 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 DAPK3O43293 454 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 ATMINO43313 823 aaPredicted RBP7.68□□□□□ -1.18
CUX1-219ENST00000606749 PRPSAP2O60256 369 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 RNF8O76064 485 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 DXOO77932 396 aaKnown RBP7.68□□□□□ -1.18
CUX1-219ENST00000606749 ANXA6P08133 673 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 C6P13671 934 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 ERCC2P18074 760 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 MIPP30301 263 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 RGRP47804 291 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 HCAR3P49019 387 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 RPIAP49247 311 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 LIG3P49916 1009 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 BLKP51451 505 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 HK3P52790 923 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 GABREP78334 506 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 NSUN2Q08J23 767 aaKnown RBP eCLIP7.68□□□□□ -1.18
CUX1-219ENST00000606749 CCDC173Q0VFZ6 552 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 INPP5AQ14642 412 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 AGERQ15109 404 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 ASIC2Q16515 512 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 PERM1Q5SV97 790 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 C6orf132Q5T0Z8 1188 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 LVRNQ6Q4G3 990 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 ARHGAP36Q6ZRI8 547 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 RFX8Q6ZV50 586 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 SRLQ86TD4 932 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 ZSWIM9Q86XI8 627 aa7.68□□□□□ -1.18
CUX1-219ENST00000606749 PSTKQ8IV42 348 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms