RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TNFSF14O43557 240 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 DFNA5O60443 496 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 ASLP04424 464 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 ITGAVP06756 1048 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 VAV1P15498 845 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 RHOQP17081 205 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 SERPINB6P35237 376 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 NR2C2P49116 596 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 VPS41P49754 854 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 TERF1P54274 439 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 GDF10P55107 478 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 ST8SIA6P61647 398 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 RPS24P62847 133 aaKnown RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 TUBB4BP68371 445 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 GUCY2DQ02846 1103 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 SFSWAPQ12872 951 aaKnown RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 TRIP13Q15645 432 aaPredicted RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 FAM182AQ5T1J6 154 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 ACBD5Q5T8D3 534 aaPredicted RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 KIAA0895LQ68EN5 471 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 C19orf48Q6RUI8 117 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 GSTA5Q7RTV2 222 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 MAATS1Q7Z4T9 603 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 PDZD3Q86UT5 571 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 NLRP14Q86W24 1093 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 CDKL3Q8IVW4 592 aaPredicted RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 ARHGAP12Q8IWW6 846 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 GLIS1Q8NBF1 620 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 ATL2Q8NHH9 583 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 FIBINQ8TAL6 211 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 GRK7Q8WTQ7 553 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 SLCO2A1Q92959 643 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 TTC17Q96AE7 1141 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 QKIQ96PU8 341 aaKnown RBP eCLIP12.87□□□□□ -0.35
UPF1-208ENST00000600012 TRIM31Q9BZY9 425 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 RSPH9Q9H1X1 276 aaPredicted RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 DPH5Q9H2P9 285 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 PABPC3Q9H361 631 aaKnown RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 TMEM248Q9NWD8 314 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 DRG1Q9Y295 367 aaKnown RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 COL5A1P20908 1838 aaPredicted RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 GOLGA8CPA6NN73 597 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 WASH4PA8MWX3 477 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 H0Y8X5 98 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 RNASEH1O60930 286 aaKnown RBP12.86□□□□□ -0.35
UPF1-208ENST00000600012 ZSCAN5DPP0CG00 497 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 ETS1P14921 441 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 RBL1P28749 1068 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 CTSKP43235 329 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 C21orf59P57076 290 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 RACK1P63244 317 aaKnown RBP12.86□□□□□ -0.35
UPF1-208ENST00000600012 GALNT2Q10471 571 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 PTK6Q13882 451 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 PPP1R7Q15435 360 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 COL28A1Q2UY09 1125 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 HNRNPA1L2Q32P51 320 aaKnown RBP12.86□□□□□ -0.35
UPF1-208ENST00000600012 C5orf22Q49AR2 442 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 SLC45A4Q5BKX6 768 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 RABGAP1LQ5R372 815 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 LAYNQ6UX15 382 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 CCDC117Q8IWD4 279 aaPredicted RBP12.86□□□□□ -0.35
UPF1-208ENST00000600012 KDM1BQ8NB78 822 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 GANCQ8TET4 914 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 CASKIN2Q8WXE0 1202 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 MYO19Q96H55 970 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 LMLNQ96KR4 655 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 LGMNQ99538 433 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 ORAI3Q9BRQ5 295 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 ACE2Q9BYF1 805 aaPredicted RBP12.86□□□□□ -0.35
UPF1-208ENST00000600012 SLC39A8Q9C0K1 460 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 EPB41L5Q9HCM4 733 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 SCUBE2Q9NQ36 999 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 FBXL12Q9NXK8 326 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 ZNF212Q9UDV6 495 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 RAXQ9Y2V3 346 aa12.86□□□□□ -0.35
UPF1-208ENST00000600012 A0A1W2PPC4 97 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 TARSL2A2RTX5 802 aaKnown RBP12.85□□□□□ -0.35
UPF1-208ENST00000600012 BHMG1C9JSJ3 638 aaPredicted RBP12.85□□□□□ -0.35
UPF1-208ENST00000600012 DFFAO00273 331 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 PPP1R12AO14974 1030 aaPredicted RBP12.85□□□□□ -0.35
UPF1-208ENST00000600012 VILLO15195 856 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 KCNN4O15554 427 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 SIN3BO75182 1162 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 GAS8O95995 478 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 IFNB1P01574 187 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 KRT14P02533 472 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 IGHV4-34P06331 123 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 CSKP41240 450 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 VSNL1P62760 191 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 AP1B1Q10567 949 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 XRCC4Q13426 336 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 CDH18Q13634 790 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 PDK1Q15118 436 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 TRADDQ15628 312 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 CST6Q15828 149 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 AFMIDQ63HM1 303 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 ARHGAP36Q6ZRI8 547 aa12.85□□□□□ -0.35
UPF1-208ENST00000600012 BZW1Q7L1Q6 419 aaKnown RBP12.85□□□□□ -0.35
UPF1-208ENST00000600012 GSPT2Q8IYD1 628 aaKnown RBP12.85□□□□□ -0.35
UPF1-208ENST00000600012 FAM71DQ8N9W8 422 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms