RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CCL16O15467 120 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 SCN2BO60939 215 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 LYNP07948 512 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 CRATP43155 626 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 HYIQ5T013 277 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 CTU1Q7Z7A3 348 aaKnown RBP20.58■□□□□ 0.89
UPF1-207ENST00000599848 MTMR14Q8NCE2 650 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 CYP2W1Q8TAV3 490 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 NUDT5Q9UKK9 219 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 ZDHHC9Q9Y397 364 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 UBXN7O94888 489 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 GPM6BQ13491 265 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 FUT10Q6P4F1 479 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.58■□□□□ 0.89
UPF1-207ENST00000599848 EIF3MQ7L2H7 374 aaKnown RBP20.58■□□□□ 0.89
UPF1-207ENST00000599848 PARGQ86W56 976 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 CASKIN2Q8WXE0 1202 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 BUD31P41223 144 aaPredicted RBP20.58■□□□□ 0.89
UPF1-207ENST00000599848 DPYSL3Q14195 570 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 CDC14AQ9UNH5 594 aa20.58■□□□□ 0.89
UPF1-207ENST00000599848 PNMA8CA0A1B0GUJ8 204 aa20.58■□□□□ 0.88
UPF1-207ENST00000599848 ABHD14A-ACY1A0A1B0GW23 586 aa20.58■□□□□ 0.88
UPF1-207ENST00000599848 TIGD5Q53EQ6 642 aa20.58■□□□□ 0.88
UPF1-207ENST00000599848 PADI3Q9ULW8 664 aa20.58■□□□□ 0.88
UPF1-207ENST00000599848 CNTNAP1P78357 1384 aa20.58■□□□□ 0.88
UPF1-207ENST00000599848 C9J4A7 227 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CDH3P22223 829 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 SPDYCQ5MJ68 293 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 SNAP47Q5SQN1 464 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 SH2D3CQ8N5H7 860 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 ITFG1Q8TB96 612 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 DNAJC11Q9NVH1 559 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 MFN2O95140 757 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 POP4O95707 220 aaKnown RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 DUSP4Q13115 394 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 RASA2Q15283 850 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 PTPRNQ16849 979 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 TRIQKQ629K1 86 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 MZT2AQ6P582 158 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 FAM183BPQ6ZVS7 135 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 GALNT7Q86SF2 657 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CACTIN-AS1Q8N1I8 211 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 YIPF3Q9GZM5 350 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 SPRTNQ9H040 489 aaPredicted RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 PIGUQ9H490 435 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CYLDQ9NQC7 956 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CCDC177Q9NQR7 707 aaPredicted RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 ANKRD63C9JTQ0 380 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CDH5P33151 784 aaPredicted RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 C9orf57Q5W0N0 161 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 FAM171BQ6P995 826 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 LBX2Q6XYB7 198 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 DET1Q7L5Y6 550 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 TMEM161BQ8NDZ6 487 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 PDLIM2Q96JY6 352 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 ZNF354BQ96LW1 612 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 TEFMQ96QE5 360 aaKnown RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 SLC38A3Q99624 504 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 N6AMT1Q9Y5N5 214 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CAPN1P07384 714 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CCNYL3P0C7X3 344 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 AP1S1P61966 158 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CSNK2BP67870 215 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 PAPD7Q5XG87 772 aaKnown RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 ACMSDQ8TDX5 336 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 C9orf16Q9BUW7 83 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 CLEC4MQ9H2X3 399 aaPredicted RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 KLHL1Q9NR64 748 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 COPG2Q9UBF2 871 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 SLC45A1Q9Y2W3 748 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 IRGMA1A4Y4 181 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 SSR2P43308 183 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 GSTM5P46439 218 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 BMPR2Q13873 1038 aa20.57■□□□□ 0.88
UPF1-207ENST00000599848 PRCCQ92733 491 aaPredicted RBP20.57■□□□□ 0.88
UPF1-207ENST00000599848 TIPRLO75663 272 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 ALADP13716 330 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 NDUFS1P28331 727 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 RBL1P28749 1068 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 COLEC12Q5KU26 742 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 ARMC4Q5T2S8 1044 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 ZNF549Q6P9A3 640 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 ZNF563Q8TA94 476 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 PRICKLE1Q96MT3 831 aaPredicted RBP20.56■□□□□ 0.88
UPF1-207ENST00000599848 HMGXB4Q9UGU5 601 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 SPATA31D1Q6ZQQ2 1576 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 RBM47A0AV96 593 aaKnown RBP20.56■□□□□ 0.88
UPF1-207ENST00000599848 MAGEB3O15480 346 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 EPORP19235 508 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 AVPR1BP47901 424 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 POLD2P49005 469 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 GYS2P54840 703 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 RHBDL3P58872 404 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 ANKS1BQ7Z6G8 1248 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 IRX2Q9BZI1 471 aaPredicted RBP20.56■□□□□ 0.88
UPF1-207ENST00000599848 PALMDQ9NP74 551 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 ATRNO75882 1429 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 TFPIP10646 304 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 CPA2P48052 419 aa20.56■□□□□ 0.88
UPF1-207ENST00000599848 CNSTQ6PJW8 725 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms