RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 TDRD1Q9BXT4 1180 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 GBA3Q9H227 469 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 GOLGA6AQ9NYA3 693 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 PPIL1Q9Y3C6 166 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 PCDHGC4Q9Y5F7 938 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 PCDHGA5Q9Y5G8 931 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 RAI2Q9Y5P3 530 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 R4GN57 208 aa16.7■□□□□ 0.26
SHKBP1-219ENST00000599575 METTL12A8MUP2 240 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 UPK3BL1B0FP48 263 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 UPK3BL2E5RIL1 263 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PGLSO95336 258 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PIGNO95427 931 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 TIMP2P16035 220 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PAFAH1B1P43034 410 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 SKOR1P84550 965 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 DSC2Q02487 901 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 NIPAL4Q0D2K0 466 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 MPP3Q13368 585 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PRPSAP1Q14558 356 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PARP6Q2NL67 630 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 RABEPKQ7Z6M1 372 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 ADAT2Q7Z6V5 191 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 FAM124AQ86V42 546 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 RAVER1Q8IY67 606 aaKnown RBP16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 C17orf53Q8N3J3 647 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 FAM160A2Q8N612 972 aaPredicted RBP16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PRELID2Q8N945 189 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 FAM71DQ8N9W8 422 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 ATL2Q8NHH9 583 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 C1orf54Q8WWF1 131 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 ASB12Q8WXK4 309 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 ATG4AQ8WYN0 398 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 TMEM121Q9BTD3 319 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 GPR174Q9BXC1 333 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 FAM153AQ9UHL3 310 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 RSPH14Q9UHP6 348 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 PCDHB9Q9Y5E1 797 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 FADS3Q9Y5Q0 445 aa16.69■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3DA0A087WVF3 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3IA0A087WXS9 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3EA0A087X179 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3KA0A087X1G2 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3FA6NER0 549 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3LB9A6J9 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 LATO43561 262 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CPP00450 1065 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 MMP2P08253 660 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3HP0C7X1 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 NFKB1P19838 968 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CD68P34810 354 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CD86P42081 329 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 GRIA4P48058 902 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 FNTAP49354 379 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 METAP1P53582 386 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TAS2R38P59533 333 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 RPS21P63220 83 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TRAF2Q12933 501 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 POM121L1PQ3SYA9 428 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 KIAA0895LQ68EN5 471 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3GQ6DHY5 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3CQ6IPX1 549 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CCDC70Q6NSX1 233 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 SYT10Q6XYQ8 523 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 ARHGEF18Q6ZSZ5 1173 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 USP45Q70EL2 814 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 PRPF39Q86UA1 669 aaKnown RBP16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CREG2Q8IUH2 290 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 TBC1D3Q8IZP1 549 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CCDC89Q8N998 374 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 DNASE2BQ8WZ79 361 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 SCRN2Q96FV2 425 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 RUNDC3BQ96NL0 473 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 FAM118BQ9BPY3 351 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 CEP41Q9BYV8 373 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 PCDH9Q9HC56 1237 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 KCTD5Q9NXV2 234 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 DMTF1Q9Y222 760 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 PLXND1Q9Y4D7 1925 aa16.68■□□□□ 0.26
SHKBP1-219ENST00000599575 ERI2A8K979 691 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 NEMP1O14524 444 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 RIOK3O14730 519 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 PSMD3O43242 534 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 RNGTTO60942 597 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 LMNAP02545 664 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 BCKDHBP21953 392 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 GEMP55040 296 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 CDK18Q07002 472 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 SRSF5Q13243 272 aaKnown RBP16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 TUBB2AQ13885 445 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 TMEM52BQ4KMG9 183 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 LYSMD4Q5XG99 296 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 PRR23BQ6ZRT6 265 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 B4GALNT4Q76KP1 1039 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 KLHDC8BQ8IXV7 354 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 FRMD1Q8N878 549 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 SUMF1Q8NBK3 374 aa16.67■□□□□ 0.26
SHKBP1-219ENST00000599575 GRK7Q8WTQ7 553 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms