RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 LY6DQ14210 128 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 IQCB1Q15051 598 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 FAXCQ5TGI0 409 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 RWDD4Q6NW29 188 aaKnown RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 LVRNQ6Q4G3 990 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 TRIM72Q6ZMU5 477 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 MACC1Q6ZN28 852 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 CCDC81Q6ZN84 652 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 IRF2BP2Q7Z5L9 587 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 SDR16C5Q8N3Y7 309 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 FSTL5Q8N475 847 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 OR6K2Q8NGY2 324 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 CASKIN2Q8WXE0 1202 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 LIN37Q96GY3 246 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 CCDC3Q9BQI4 270 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 SYT11Q9BT88 431 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 LRRC61Q9BV99 259 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 SEMA4CQ9C0C4 833 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 CLPBQ9H078 707 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 NDFIP2Q9NV92 336 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 DKK3Q9UBP4 350 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 DNAI1Q9UI46 699 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 PNMA8BQ9ULN7 279 aaPredicted RBP12.67□□□□□ -0.38
TRIM28-212ENST00000597995 PADI4Q9UM07 663 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 MFHAS1Q9Y4C4 1052 aa12.67□□□□□ -0.38
TRIM28-212ENST00000597995 TENM4Q6N022 2769 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 C2CD4BA6NLJ0 364 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 TMEM110-MUSTN1A8MSY1 372 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 RAMP2O60895 175 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 TSHRP16473 764 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 RFC1P35251 1148 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 EIF4A3P38919 411 aaKnown RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 SUOXP51687 545 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 GSCP56915 257 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 RAD51Q06609 339 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 CLN3Q13286 438 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 ELOCQ15369 112 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 INO80DQ53TQ3 878 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 CRTC1Q6UUV9 634 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 MON1BQ7L1V2 547 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 STRADAQ7RTN6 431 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 VPS36Q86VN1 386 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 PHF13Q86YI8 300 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 TP53I13Q8NBR0 393 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 CXorf40AQ8TE69 158 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 SCG3Q8WXD2 468 aaKnown RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 CENPIQ92674 756 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 TBC1D31Q96DN5 1066 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 GDAP1L1Q96MZ0 367 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 NAP1L5Q96NT1 182 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-212ENST00000597995 AGPAT1Q99943 283 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 TTYH3Q9C0H2 523 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 ADAM22Q9P0K1 906 aa12.66□□□□□ -0.38
TRIM28-212ENST00000597995 FAM72CH0Y354 149 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 MMP20O60882 483 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 LRIG2O94898 1065 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 PLEKP08567 350 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 ALPIP09923 528 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 SDC4P31431 198 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 PTPN9P43378 593 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 ZNF165P49910 485 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 HK3P52790 923 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 PDX1P52945 283 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 HDAC4P56524 1084 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 CDO1Q16878 200 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 TMEM52BQ4KMG9 183 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 ATXN7L2Q5T6C5 722 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 FAM72AQ5TYM5 149 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 E4F1Q66K89 784 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 FAM72DQ6L9T8 149 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 FOXR1Q6PIV2 292 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 XKR5Q6UX68 686 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 FAM72BQ86X60 149 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 ARL10Q8N8L6 244 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 HCAR2Q8TDS4 363 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 CCNL2Q96S94 520 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 EPAS1Q99814 870 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 CPEB1Q9BZB8 566 aaKnown RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 NAT10Q9H0A0 1025 aaKnown RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 MBNL1Q9NR56 388 aaKnown RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 TAS2R14Q9NYV8 317 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 ATXN7L1Q9ULK2 861 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-212ENST00000597995 DOLKQ9UPQ8 538 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 NEU3Q9UQ49 428 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 PCDHGA7Q9Y5G6 932 aa12.65□□□□□ -0.38
TRIM28-212ENST00000597995 PMS2P1A4D2B8 440 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 SIGLEC16A6NMB1 481 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 PLD2O14939 933 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 BUB1O43683 1085 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 TMCC1O94876 653 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 IGSF6O95976 241 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 KRT3P12035 628 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 TIMP2P16035 220 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 NSFP46459 744 aaKnown RBP12.64□□□□□ -0.39
TRIM28-212ENST00000597995 YBEYP58557 167 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-212ENST00000597995 C1QBPQ07021 282 aaKnown RBP12.64□□□□□ -0.39
TRIM28-212ENST00000597995 ELP6Q0PNE2 266 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 LRRC14Q15048 493 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 KLHL40Q2TBA0 621 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms