RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 ITPR2Q14571 2701 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ENO4A6NNW6 628 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF891A8MT65 544 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 HGSO14964 777 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 NUDT21O43809 227 aaKnown RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 SRGAP2O75044 1071 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 POP4O95707 220 aaKnown RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 CPNE6O95741 557 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 CD160O95971 181 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ERBB2P04626 1255 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 SULT1E1P49888 294 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 SLC6A3Q01959 620 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 DEUP1Q05D60 604 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 PNOCQ13519 176 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 STIM1Q13586 685 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 HLTFQ14527 1009 aaKnown RBP eCLIP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 C16orf72Q14CZ0 275 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 CLPPQ16740 277 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 MYLK3Q32MK0 819 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 C14orf28Q4W4Y0 310 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 LRRC73Q5JTD7 316 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 OGFOD3Q6PK18 319 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 GDPD4Q6W3E5 623 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 TMPRSS9Q7Z410 1059 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ATCAYQ86WG3 371 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ZDHHC17Q8IUH5 632 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 PASD1Q8IV76 773 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 WDTC1Q8N5D0 677 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 CCDC112Q8NEF3 446 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ARHGEF2Q92974 986 aaKnown RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 NKD1Q969G9 470 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 PDXPQ96GD0 296 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 FAM81BQ96LP2 452 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 WDR92Q96MX6 357 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 GSDMAQ96QA5 445 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 TAAR9Q96RI9 348 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 WRAP53Q9BUR4 548 aaKnown RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 CDH19Q9H159 772 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 SEMA6CQ9H3T2 930 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 GOLPH3LQ9H4A5 285 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 UBE2TQ9NPD8 197 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ACP6Q9NPH0 428 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 LRIT1Q9P2V4 623 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 PCDHGC3Q9UN70 934 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 PCDHGA3Q9Y5H0 932 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 ACTL7AQ9Y615 435 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 DGKBQ9Y6T7 804 aa10.24□□□□□ -0.77
TRIM28-210ENST00000597618 RP1L1Q8IWN7 2480 aaPredicted RBP10.24□□□□□ -0.77
TRIM28-210ENST00000597618 CAPN5O15484 640 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-210ENST00000597618 ZW10O43264 779 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 TNFP01375 233 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 CCL4P13236 92 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 LIFP15018 202 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 TFE3P19532 575 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-210ENST00000597618 SUOXP51687 545 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 ELP6Q0PNE2 266 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 WSCD2Q2TBF2 565 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 EFHC2Q5JST6 749 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 TAF8Q7Z7C8 310 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 PIM3Q86V86 326 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 DRC7Q8IY82 874 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 C1orf131Q8NDD1 294 aaKnown RBP10.23□□□□□ -0.77
TRIM28-210ENST00000597618 FAM46DQ8NEK8 389 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 NT5C3BQ969T7 300 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 VOPP1Q96AW1 172 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 GDAP1L1Q96MZ0 367 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 HAPLN3Q96S86 360 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 APOOQ9BUR5 198 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 ZNF71Q9NQZ8 489 aaPredicted RBP10.23□□□□□ -0.77
TRIM28-210ENST00000597618 PPARGC1AQ9UBK2 798 aaKnown RBP10.23□□□□□ -0.77
TRIM28-210ENST00000597618 DKK3Q9UBP4 350 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 DACH1Q9UI36 760 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 HPCAL4Q9UM19 191 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 PLAAQ9Y263 795 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 OR1A2Q9Y585 309 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 UNC13CQ8NB66 2214 aa10.23□□□□□ -0.77
TRIM28-210ENST00000597618 ICE1Q9Y2F5 2266 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 B4DGG1 531 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 SMC2O95347 1197 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 XPAP23025 273 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-210ENST00000597618 UGT1A3P35503 534 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 ACVRL1P37023 503 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 USP8P40818 1118 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 CD97P48960 835 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 RNASE9P60153 205 aaKnown RBP10.22□□□□□ -0.77
TRIM28-210ENST00000597618 RAD51Q06609 339 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 MTM1Q13496 603 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 INPP5AQ14642 412 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 SLC25A52Q3SY17 297 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 PTPN20Q4JDL3 420 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 TMEM52BQ4KMG9 183 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 LACTB2Q53H82 288 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-210ENST00000597618 ARTNQ5T4W7 220 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 ATXN7L2Q5T6C5 722 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-210ENST00000597618 SPECC1LQ69YQ0 1117 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 IRF2BP1Q8IU81 584 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 TRIM59Q8IWR1 403 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 CACNA2D3Q8IZS8 1091 aa10.22□□□□□ -0.77
TRIM28-210ENST00000597618 KIAA1524Q8TCG1 905 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms