RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 ZC3H18Q86VM9 953 aaKnown RBP11.2□□□□□ -0.62
LIG1-211ENST00000596457 VSIG1Q86XK7 387 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 RNF10Q8N5U6 811 aaKnown RBP11.2□□□□□ -0.62
LIG1-211ENST00000596457 DNASE2BQ8WZ79 361 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 P3H4Q92791 437 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 HDAC11Q96DB2 347 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 FEM1CQ96JP0 617 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 SERAC1Q96JX3 654 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 SLC6A18Q96N87 628 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 PSKH2Q96QS6 385 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 NUDCD1Q96RS6 583 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 EDEM2Q9BV94 578 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 CEP41Q9BYV8 373 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 KDM4CQ9H3R0 1056 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 NOD2Q9HC29 1040 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 PREBQ9HCU5 417 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 TM9SF3Q9HD45 589 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 FZD3Q9NPG1 666 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 IGSF5Q9NSI5 407 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 PPP2R2CQ9Y2T4 447 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 PCDHGC4Q9Y5F7 938 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 FADS3Q9Y5Q0 445 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 SDK1Q7Z5N4 2213 aa11.2□□□□□ -0.62
LIG1-211ENST00000596457 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 A0A1B0GVT2 93 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 A0A1W2PPC4 97 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 A8MX80 341 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 H7C0C1 242 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 MMP20O60882 483 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 HLA-DQB2P05538 268 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 SERPINF2P08697 491 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 PRLRP16471 622 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 ENGP17813 658 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 TGM2P21980 687 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 HSPA9P38646 679 aaKnown RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 ATP5OP48047 213 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 PEX5P50542 639 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 COPS2P61201 443 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 AP1S1P61966 158 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 FAM193AP78312 1265 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 DSC2Q02487 901 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 PPIDQ08752 370 aaKnown RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 TEAD4Q15561 434 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 SETMARQ53H47 684 aaPredicted RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 PEAR1Q5VY43 1037 aaPredicted RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 SEL1L3Q68CR1 1132 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 BZW1Q7L1Q6 419 aaKnown RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 HORMAD1Q86X24 394 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 OR2I1PQ8NGU4 316 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 CXorf40AQ8TE69 158 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 ALG3Q92685 438 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 FAM131CQ96AQ9 280 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 NSMCE3Q96MG7 304 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 ZNF641Q96N77 438 aaPredicted RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 TSGA13Q96PP4 275 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 TUBGCP5Q96RT8 1024 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 SEMA3CQ99985 751 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 FAM118BQ9BPY3 351 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 WRAP53Q9BUR4 548 aaKnown RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 OSBPL8Q9BZF1 889 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 ZFR2Q9UPR6 939 aaKnown RBP11.19□□□□□ -0.62
LIG1-211ENST00000596457 CA5BQ9Y2D0 317 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 TMEM131Q92545 1883 aa11.19□□□□□ -0.62
LIG1-211ENST00000596457 LNP1A1A4G5 178 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 IGLON5A6NGN9 336 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 GOLGA8CPA6NN73 597 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 MIF4GDA9UHW6 222 aaKnown RBP11.18□□□□□ -0.62
LIG1-211ENST00000596457 KCNK3O14649 394 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 WNT9AO14904 365 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 DDX3YO15523 660 aaKnown RBP11.18□□□□□ -0.62
LIG1-211ENST00000596457 PAK4O96013 591 aaPredicted RBP11.18□□□□□ -0.62
LIG1-211ENST00000596457 SYPP08247 313 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 HOXD12P35452 270 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 NR2C2P49116 596 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 C21orf59P57076 290 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 ZBTB17Q13105 803 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 SGCGQ13326 291 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 STAT4Q14765 748 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 PPP2R5EQ16537 467 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 TAZQ16635 292 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 UGP2Q16851 508 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 ERAP2Q6P179 960 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 TRIM69Q86WT6 500 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 ZSWIM9Q86XI8 627 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 TEX26Q8N6G2 289 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 TFB1MQ8WVM0 346 aaKnown RBP11.18□□□□□ -0.62
LIG1-211ENST00000596457 MAML1Q92585 1016 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 RAB7BQ96AH8 199 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 VOPP1Q96AW1 172 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 AGAP3Q96P47 875 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 ALS2CR12Q96Q35 445 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 MGME1Q9BQP7 344 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 HERPUD2Q9BSE4 406 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 SLC17A9Q9BYT1 436 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 POLR1EQ9GZS1 481 aaKnown RBP11.18□□□□□ -0.62
LIG1-211ENST00000596457 C10orf88Q9H8K7 445 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 PCDH12Q9NPG4 1184 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 HAUS2Q9NVX0 235 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 DKK3Q9UBP4 350 aa11.18□□□□□ -0.62
LIG1-211ENST00000596457 COQ6Q9Y2Z9 468 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms