RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ERAP2Q6P179 960 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 NPNTQ6UXI9 565 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 ZNF662Q6ZS27 426 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 OLFM3Q96PB7 478 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 LGMNQ99538 433 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 GTPBP2Q9BX10 602 aaKnown RBP15.17■□□□□ 0.02
UPF1-202ENST00000594243 SLC17A9Q9BYT1 436 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 AASDHPPTQ9NRN7 309 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 ZFR2Q9UPR6 939 aaKnown RBP15.17■□□□□ 0.02
UPF1-202ENST00000594243 CACNA1AO00555 2505 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 CEP250Q9BV73 2442 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 C4orf47A7E2U8 309 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 TRAFD1O14545 582 aaPredicted RBP15.16■□□□□ 0.02
UPF1-202ENST00000594243 CDX4O14627 284 aaPredicted RBP15.16■□□□□ 0.02
UPF1-202ENST00000594243 SLC30A4O14863 429 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 AREL1O15033 823 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 VILLO15195 856 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 MAGEC1O60732 1142 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 NFKBIAP25963 317 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 ID4P47928 161 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 C21orf59P57076 290 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 SGCGQ13326 291 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 LLGL1Q15334 1064 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 ZNF284Q2VY69 593 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 TMEM259Q4ZIN3 620 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 FAM174AQ8TBP5 190 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 CXorf40AQ8TE69 158 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 ASB12Q8WXK4 309 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 ECHDC3Q96DC8 303 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 SLC6A18Q96N87 628 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 SEMA3CQ99985 751 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 RTKNQ9BST9 563 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 NOD2Q9HC29 1040 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 FSCN3Q9NQT6 498 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 ANKRD6Q9Y2G4 727 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 PCDHGC4Q9Y5F7 938 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 SLCO1B1Q9Y6L6 691 aa15.16■□□□□ 0.02
UPF1-202ENST00000594243 A0A1B0GVT2 93 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 TTC24A2A3L6 582 aaPredicted RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 UPK3BL1B0FP48 263 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 UPK3BL2E5RIL1 263 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 KCNK1O00180 336 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 RIOK3O14730 519 aaKnown RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 SLC31A1O15431 190 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 GJB3O75712 270 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 PAK4O96013 591 aaPredicted RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 JCHAINP01591 159 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 HNRNPA2B1P22626 353 aaKnown RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 AKT2P31751 481 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 PTPN7P35236 360 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 IFI35P80217 286 aaPredicted RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 ADCY2Q08462 1091 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 OVGP1Q12889 678 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 GRIK2Q13002 908 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 PUM1Q14671 1186 aaKnown RBP eCLIP15.15■□□□□ 0.02
UPF1-202ENST00000594243 TMEM52BQ4KMG9 183 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 CCDC181Q5TID7 509 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 SEL1L3Q68CR1 1132 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 ALG1LQ6GMV1 187 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 BBS12Q6ZW61 710 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 IQCHQ86VS3 1027 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 NDUFAF2Q8N183 169 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 MINDY1Q8N5J2 469 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 MFSD2AQ8NA29 543 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 LRRN4Q8WUT4 740 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 TFB1MQ8WVM0 346 aaKnown RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 SPOCK2Q92563 424 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 KLK6Q92876 244 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 RMDN1Q96DB5 314 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 IL12RB2Q99665 862 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 HEMGNQ9BXL5 484 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 OSBPL8Q9BZF1 889 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 DLL3Q9NYJ7 618 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 SAE1Q9UBE0 346 aaPredicted RBP15.15■□□□□ 0.02
UPF1-202ENST00000594243 ATP8A1Q9Y2Q0 1164 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 HS3ST3A1Q9Y663 406 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 CAPN6Q9Y6Q1 641 aa15.15■□□□□ 0.02
UPF1-202ENST00000594243 IGLON5A6NGN9 336 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 APOC4-APOC2K7ER74 178 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 MTSS1O43312 755 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 HTRA2O43464 458 aaPredicted RBP15.14■□□□□ 0.01
UPF1-202ENST00000594243 DFNA5O60443 496 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 OPHN1O60890 802 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 TM7SF2O76062 418 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 TJP3O95049 919 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 CER1O95813 267 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 FTCDO95954 541 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 APOC2P02655 101 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 PYGMP11217 842 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 KIF19Q2TAC6 998 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 ARMC12Q5T9G4 340 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 PDCD6IPQ8WUM4 868 aaKnown RBP15.14■□□□□ 0.01
UPF1-202ENST00000594243 ALG3Q92685 438 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 HES6Q96HZ4 224 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 NSMCE3Q96MG7 304 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 LENG8Q96PV6 779 aaPredicted RBP15.14■□□□□ 0.01
UPF1-202ENST00000594243 ALS2CR12Q96Q35 445 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 C1QTNF7Q9BXJ2 289 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 C1QTNF2Q9BXJ5 285 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 GAREM1Q9H706 876 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms