RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 DLL3Q9NYJ7 618 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 AMFRQ9UKV5 643 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 EFR3BQ9Y2G0 817 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 SLCO1B1Q9Y6L6 691 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CACNA1AO00555 2505 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 hCG_1818297A0A087WSY0 165 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 A0A0U1RQJ8 604 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 A0A1W2PQ67 120 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 UPK3BL1B0FP48 263 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 UPK3BL2E5RIL1 263 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 PRAMEF26H0Y7S4 382 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 TRAFD1O14545 582 aaPredicted RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 CDX4O14627 284 aaPredicted RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 SLC30A4O14863 429 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 VILLO15195 856 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 NEBLO76041 1014 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 KRT10P13645 584 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 TIMP2P16035 220 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 CES1P23141 567 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 CD38P28907 300 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 PTPN7P35236 360 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 CETN2P41208 172 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 CSNK1EP49674 416 aaKnown RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 PEX5P50542 639 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 POLR2LP62875 67 aaKnown RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 GRIK2Q13002 908 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 UGP2Q16851 508 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 SLC45A4Q5BKX6 768 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 KAZNQ674X7 775 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 ALG1LQ6GMV1 187 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 ZNF662Q6ZS27 426 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 ADAT2Q7Z6V5 191 aaKnown RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 UBL4BQ8N7F7 174 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 P3H4Q92791 437 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 SLC6A18Q96N87 628 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 GTPBP2Q9BX10 602 aaKnown RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 NOD2Q9HC29 1040 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 NT5MQ9NPB1 228 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 AASDHPPTQ9NRN7 309 aa12.01□□□□□ -0.49
LIG3-213ENST00000590630 RBM22Q9NW64 420 aaKnown RBP eCLIP12.01□□□□□ -0.492e-8■■■■■ 35.1
LIG3-213ENST00000590630 ZFR2Q9UPR6 939 aaKnown RBP12.01□□□□□ -0.49
LIG3-213ENST00000590630 A0A1B0GVT2 93 aa12□□□□□ -0.49
LIG3-213ENST00000590630 SPINT1O43278 529 aa12□□□□□ -0.49
LIG3-213ENST00000590630 HTRA2O43464 458 aaPredicted RBP12□□□□□ -0.49
LIG3-213ENST00000590630 GJB3O75712 270 aa12□□□□□ -0.49
LIG3-213ENST00000590630 CER1O95813 267 aa12□□□□□ -0.49
LIG3-213ENST00000590630 HNRNPA2B1P22626 353 aaKnown RBP12□□□□□ -0.49
LIG3-213ENST00000590630 C21orf59P57076 290 aa12□□□□□ -0.49
LIG3-213ENST00000590630 MAXP61244 160 aa12□□□□□ -0.49
LIG3-213ENST00000590630 IFI35P80217 286 aaPredicted RBP12□□□□□ -0.49
LIG3-213ENST00000590630 AP1B1Q10567 949 aa12□□□□□ -0.49
LIG3-213ENST00000590630 OVGP1Q12889 678 aa12□□□□□ -0.49
LIG3-213ENST00000590630 PUM1Q14671 1186 aaKnown RBP eCLIP12□□□□□ -0.49
LIG3-213ENST00000590630 SEL1L3Q68CR1 1132 aa12□□□□□ -0.49
LIG3-213ENST00000590630 ERAP2Q6P179 960 aa12□□□□□ -0.49
LIG3-213ENST00000590630 NPNTQ6UXI9 565 aa12□□□□□ -0.49
LIG3-213ENST00000590630 BBS12Q6ZW61 710 aa12□□□□□ -0.49
LIG3-213ENST00000590630 IQCHQ86VS3 1027 aa12□□□□□ -0.49
LIG3-213ENST00000590630 MINDY1Q8N5J2 469 aa12□□□□□ -0.49
LIG3-213ENST00000590630 PAF1Q8N7H5 531 aa12□□□□□ -0.49
LIG3-213ENST00000590630 MFSD2AQ8NA29 543 aa12□□□□□ -0.49
LIG3-213ENST00000590630 TMEM145Q8NBT3 493 aa12□□□□□ -0.49
LIG3-213ENST00000590630 ASB12Q8WXK4 309 aa12□□□□□ -0.49
LIG3-213ENST00000590630 ALG3Q92685 438 aa12□□□□□ -0.49
LIG3-213ENST00000590630 RMDN1Q96DB5 314 aa12□□□□□ -0.49
LIG3-213ENST00000590630 SEMA3CQ99985 751 aa12□□□□□ -0.49
LIG3-213ENST00000590630 RTKNQ9BST9 563 aa12□□□□□ -0.49
LIG3-213ENST00000590630 C1QTNF2Q9BXJ5 285 aa12□□□□□ -0.49
LIG3-213ENST00000590630 SLC17A9Q9BYT1 436 aa12□□□□□ -0.49
LIG3-213ENST00000590630 PCDH12Q9NPG4 1184 aa12□□□□□ -0.49
LIG3-213ENST00000590630 FSCN3Q9NQT6 498 aa12□□□□□ -0.49
LIG3-213ENST00000590630 GGT7Q9UJ14 662 aa12□□□□□ -0.49
LIG3-213ENST00000590630 GUCA1BQ9UMX6 200 aa12□□□□□ -0.49
LIG3-213ENST00000590630 ITM2BQ9Y287 266 aa12□□□□□ -0.49
LIG3-213ENST00000590630 ANKRD6Q9Y2G4 727 aa12□□□□□ -0.49
LIG3-213ENST00000590630 ATP8A1Q9Y2Q0 1164 aa12□□□□□ -0.49
LIG3-213ENST00000590630 CAPN6Q9Y6Q1 641 aa12□□□□□ -0.49
LIG3-213ENST00000590630 A0A1W2PR77 199 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 TTC24A2A3L6 582 aaPredicted RBP11.99□□□□□ -0.49
LIG3-213ENST00000590630 C4orf47A7E2U8 309 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 APOC4-APOC2K7ER74 178 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 KCNK1O00180 336 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 RIOK3O14730 519 aaKnown RBP11.99□□□□□ -0.49
LIG3-213ENST00000590630 SLC31A1O15431 190 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 MTSS1O43312 755 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 MAGEC1O60732 1142 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 FTCDO95954 541 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 APOC2P02655 101 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 HLA-DQB2P05538 268 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 PECAM1P16284 738 aaPredicted RBP11.99□□□□□ -0.49
LIG3-213ENST00000590630 PRLRP16471 622 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 NFKBIAP25963 317 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 AKT2P31751 481 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 MMP12P39900 470 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 ID4P47928 161 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 ADCY2Q08462 1091 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 ITKQ08881 620 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 SGCGQ13326 291 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 STAT4Q14765 748 aa11.99□□□□□ -0.49
LIG3-213ENST00000590630 PRKD1Q15139 912 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms