RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	MPP3	Q13368	585 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	SLC26A11	Q86WA9	606 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	GCNA	Q96QF7	691 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	IL22	Q9GZX6	179 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	MMADHC	Q9H3L0	296 aa	Predicted RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	DENND2D	Q9H6A0	471 aa	Predicted RBP	15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ATP13A1	Q9HD20	1204 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	NDUFA13	Q9P0J0	144 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	CFAP97	Q9P2B7	532 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZNF180	Q9UJW8	692 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	BPTF	Q12830	3046 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	PDE4DIP	Q5VU43	2346 aa		15.56	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZCWPW2	A0A1B0GU75	182 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	MAP3K7	O43318	606 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	KDELR3	O43731	214 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	ATP9B	O43861	1147 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	TBL1X	O60907	577 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	RHOC	P08134	193 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	KRT15	P19012	456 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	ETFB	P38117	255 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	WNT3A	P56704	352 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	FSCB	Q5H9T9	825 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	CTAGE3P	Q8IX95	158 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	RIN3	Q8TB24	985 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SCG3	Q8WXD2	468 aa	Known RBP	15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SPATA16	Q9BXB7	569 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	TRABD	Q9H4I3	376 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SENP1	Q9P0U3	644 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	FAM237B	A0A1B0GVD1	139 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	TTC24	A2A3L6	582 aa	Predicted RBP	15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	AP3B1	O00203	1094 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	PER2	O15055	1255 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	MAP3K13	O43283	966 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	LPXN	O60711	386 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	GJB3	O75712	270 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	POLB	P06746	335 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	RHO	P08100	348 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	INHBA	P08476	426 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	PTPN2	P17706	415 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	CD86	P42081	329 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	LSAMP	Q13449	338 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	MAP7	Q14244	749 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	MYBPC3	Q14896	1274 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	DBN1	Q16643	649 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	ANKRD20A4	Q4UJ75	823 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SPANXN3	Q5MJ09	141 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	FOXB2	Q5VYV0	432 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	IL31	Q6EBC2	164 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	ALG1L	Q6GMV1	187 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	LRRC74B	Q6ZQY2	392 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	BBS7	Q8IWZ6	715 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	HJURP	Q8NCD3	748 aa	Predicted RBP	15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	WFDC5	Q8TCV5	224 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SMG9	Q9H0W8	520 aa	Known RBP	15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	CHRAC1	Q9NRG0	131 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	VPS45	Q9NRW7	570 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	DNAAF2	Q9NVR5	837 aa	Known RBP	15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SLC17A6	Q9P2U8	582 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	STX18	Q9P2W9	335 aa	Known RBP	15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	HAO1	Q9UJM8	370 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	SOX13	Q9UN79	622 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	ARHGAP26	Q9UNA1	814 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	CHKB	Q9Y259	395 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	PCDHGA4	Q9Y5G9	962 aa		15.55	■□□□□ 0.08
DDX39A-209	ENST00000589318	LEFTY2	O00292	366 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	CCDC22	O60826	627 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	USP1	O94782	785 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	TARS	P26639	723 aa	Known RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	PBX2	P40425	430 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	CHRNA4	P43681	627 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	SERPINB4	P48594	390 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	GPM6B	Q13491	265 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	FRG1	Q14331	258 aa	Known RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	TEAD2	Q15562	447 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	RNF219	Q5W0B1	726 aa	Predicted RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	SH2D5	Q6ZV89	423 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	MARK2	Q7KZI7	788 aa	Known RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	ADGRD2	Q7Z7M1	963 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	CCDC117	Q8IWD4	279 aa	Predicted RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	C4orf33	Q8N1A6	199 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	CPXM2	Q8N436	756 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	ANKRD42	Q8N9B4	389 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	MFSD3	Q96ES6	412 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	TMA16	Q96EY4	203 aa	Known RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	ZNF778	Q96MU6	729 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	SAMD11	Q96NU1	681 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	SPON2	Q9BUD6	331 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	KIFC1	Q9BW19	673 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	ARNT2	Q9HBZ2	717 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	LSM7	Q9UK45	103 aa	Known RBP	15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	CCL26	Q9Y258	94 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	OR51B4	Q9Y5P0	310 aa		15.54	■□□□□ 0.08
DDX39A-209	ENST00000589318	HMX2	A2RU54	273 aa		15.53	■□□□□ 0.08
DDX39A-209	ENST00000589318	PRPF4	O43172	522 aa	Known RBP eCLIP	15.53	■□□□□ 0.08	2e-6	■■□□□ 14.1
DDX39A-209	ENST00000589318	TYROBP	O43914	113 aa		15.53	■□□□□ 0.08
DDX39A-209	ENST00000589318	CD160	O95971	181 aa		15.53	■□□□□ 0.08
DDX39A-209	ENST00000589318	HNRNPA1	P09651	372 aa	Known RBP eCLIP	15.53	■□□□□ 0.08
DDX39A-209	ENST00000589318	OXCT1	P55809	520 aa		15.53	■□□□□ 0.08
DDX39A-209	ENST00000589318	ITK	Q08881	620 aa		15.53	■□□□□ 0.08

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms