RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 PCSK9Q8NBP7 692 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 RP9Q8TA86 221 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 USP33Q8TEY7 942 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 FATE1Q969F0 183 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 AZIN2Q96A70 460 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SPDL1Q96EA4 605 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 FUBP3Q96I24 572 aaKnown RBP eCLIP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 PANX3Q96QZ0 392 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 NR1H4Q96RI1 486 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 TTC1Q99614 292 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MRPL57Q9BQC6 102 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 RTP3Q9BQQ7 232 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 FICDQ9BVA6 458 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 GATA5Q9BWX5 397 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 UPF3AQ9H1J1 476 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MRPL46Q9H2W6 279 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SPATS2LQ9NUQ6 558 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 TMEM30AQ9NV96 361 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 TLR6Q9Y2C9 796 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 TCAF1Q9Y4C2 921 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 A0A088AWK7 358 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 LOC100653049A0A140TA62 436 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 E2F8A0AVK6 867 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MAGEA13PA6NCF6 341 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 WASH4PA8MWX3 477 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 E9PAM4 449 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 ZNF195O14628 629 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SMNDC1O75940 238 aaKnown RBP eCLIP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 KRT34O76011 436 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 ZIC2O95409 532 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 PRKCGP05129 697 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 PDHA1P08559 390 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 NAGLUP54802 743 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 XIAPP98170 497 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SLC25A3Q00325 362 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MGAT3Q09327 533 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 EIF4EBP2Q13542 120 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MARC1Q5VT66 337 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 KIAA0930Q6ICG6 404 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 NEPROQ6NW34 567 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 ANKS3Q6ZW76 656 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SCN4BQ8IWT1 228 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 DEFB107AQ8IZN7 70 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 ATP6V0D2Q8N8Y2 350 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SPATA22Q8NHS9 363 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SCAMP5Q8TAC9 235 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 ZSCAN18Q8TBC5 510 aaPredicted RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SLC26A7Q8TE54 656 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 STYXQ8WUJ0 223 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 DPF3Q92784 378 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 CNDP1Q96KN2 507 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 PAAF1Q9BRP4 392 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MCMBPQ9BTE3 642 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 CCDC28BQ9BUN5 200 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 RHOBTB2Q9BYZ6 727 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SLC39A8Q9C0K1 460 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SLC25A51Q9H1U9 297 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 AGO3Q9H9G7 860 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 MRPL40Q9NQ50 206 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 OLA1Q9NTK5 396 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 PRPF19Q9UMS4 504 aaKnown RBP7.47□□□□□ -1.21
ZNF540-206ENST00000589117 CDYLQ9Y232 598 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 SSX2IPQ9Y2D8 614 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 TSC2P49815 1807 aa7.47□□□□□ -1.21
ZNF540-206ENST00000589117 FAM95CA0A1B0GW59 222 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 E9PBE3 544 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 GOLGA8TH3BQL2 631 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 NPHS1O60500 1241 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 KLHL41O60662 606 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 PMPCBO75439 489 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 MT-CYBP00156 380 aaPredicted RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ASGR1P07306 291 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 RBP1P09455 135 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 IGFBP6P24592 240 aaPredicted RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 EPHB1P54762 984 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 NKX3-2P78367 333 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 IRF9Q00978 393 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ITKQ08881 620 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 TBL3Q12788 808 aaKnown RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 KLF10Q13118 480 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 CUL3Q13618 768 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 CYLC2Q14093 348 aaPredicted RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 DLG2Q15700 870 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ARL13AQ5H913 290 aaPredicted RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 LRRC8EQ6NSJ5 796 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 RANBP10Q6VN20 620 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 RASAL3Q86YV0 1011 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ARHGAP12Q8IWW6 846 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 NUP93Q8N1F7 819 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 FSTL5Q8N475 847 aaPredicted RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 POU5F2Q8N7G0 328 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 KYQ8NBH2 561 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ELMO2Q96JJ3 720 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 FAM193BQ96PV7 902 aaPredicted RBP7.46□□□□□ -1.21
ZNF540-206ENST00000589117 PKMYT1Q99640 499 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ZYG11BQ9C0D3 744 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 EFCAB1Q9HAE3 211 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 RRAGCQ9HB90 399 aa7.46□□□□□ -1.21
ZNF540-206ENST00000589117 ARNT2Q9HBZ2 717 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms