RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 RIPK1Q13546 671 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 SMAD1Q15797 465 aaKnown RBP11.35□□□□□ -0.59
LIG3-204ENST00000585740 RALGPS1Q5JS13 557 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 FBXW10Q5XX13 1052 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 ZNF470Q6ECI4 717 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 CYB5D1Q6P9G0 228 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 CCDC149Q6ZUS6 474 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 CLNKQ7Z7G1 428 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 TBC1D1Q86TI0 1168 aaPredicted RBP11.35□□□□□ -0.59
LIG3-204ENST00000585740 SLC41A1Q8IVJ1 513 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 C10orf107Q8IVU9 208 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 CFAP52Q8N1V2 620 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 HJURPQ8NCD3 748 aaPredicted RBP11.35□□□□□ -0.59
LIG3-204ENST00000585740 OR7D4Q8NG98 312 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 PIWIL2Q8TC59 973 aaKnown RBP11.35□□□□□ -0.59
LIG3-204ENST00000585740 BRSK1Q8TDC3 778 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 STYXQ8WUJ0 223 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 MYEOVQ96EZ4 313 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 NSL1Q96IY1 281 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 ELMO2Q96JJ3 720 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 PRICKLE1Q96MT3 831 aaPredicted RBP11.35□□□□□ -0.59
LIG3-204ENST00000585740 SPON2Q9BUD6 331 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 ATXN3LQ9H3M9 355 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 TRPC7Q9HCX4 862 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 SLC2A6Q9UGQ3 507 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 APOBEC2Q9Y235 224 aaKnown RBP11.35□□□□□ -0.59
LIG3-204ENST00000585740 ANKRD36A6QL64 1941 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 PTPRSQ13332 1948 aa11.35□□□□□ -0.59
LIG3-204ENST00000585740 CCDC78A2IDD5 438 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 GOLGA8TH3BQL2 631 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 INSIG1O15503 277 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 MGRN1O60291 552 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 LILRB3O75022 631 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 KLHL2O95198 593 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 CRTAMO95727 393 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 OLFM2O95897 454 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 TOP3BO95985 862 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 KLKB1P03952 638 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 IRF1P10914 325 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 CSF2RAP15509 400 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 OGNP20774 298 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 PTPN4P29074 926 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 RPS24P62847 133 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 ELF3P78545 371 aaPredicted RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 CTBP1Q13363 440 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 LIPMQ5VYY2 423 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 LRRC8EQ6NSJ5 796 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 MRNIPQ6NTE8 343 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 FAM117BQ6P1L5 589 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 ZYG11AQ6WRX3 759 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 KDELC2Q7Z4H8 507 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 PACS2Q86VP3 889 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 PARP9Q8IXQ6 854 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 PLD6Q8N2A8 252 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 ELMOD1Q8N336 334 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 FIBCD1Q8N539 461 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.34□□□□□ -0.59
LIG3-204ENST00000585740 GPR150Q8NGU9 434 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 OR6Y1Q8NGX8 325 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 TTC8Q8TAM2 541 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 STON2Q8WXE9 905 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 MYLIPQ8WY64 445 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 MRPS31Q92665 395 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 SCYL1Q96KG9 808 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 GCNAQ96QF7 691 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 NUDCD1Q96RS6 583 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 C1QTNF1Q9BXJ1 281 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 RNF38Q9H0F5 515 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 ZBP1Q9H171 429 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 TASP1Q9H6P5 420 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 CAB39LQ9H9S4 337 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 IL23AQ9NPF7 189 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 SCUBE2Q9NQ36 999 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 GKN1Q9NS71 199 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 DNAJC28Q9NX36 388 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.34□□□□□ -0.59
LIG3-204ENST00000585740 RAPGEFL1Q9UHV5 662 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 RPL26L1Q9UNX3 145 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 RUVBL2Q9Y230 463 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 DNAJC16Q9Y2G8 782 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 MTCL1Q9Y4B5 1905 aaKnown RBP11.34□□□□□ -0.59
LIG3-204ENST00000585740 TTC28Q96AY4 2481 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 MUC3AQ02505 3323 aa11.34□□□□□ -0.59
LIG3-204ENST00000585740 A0A0D9SEW6 157 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 C2orf78A6NCI8 922 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 TRIM43BA6NCK2 446 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 G3V2L1 256 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 FCHO1O14526 889 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 HGSO14964 777 aaPredicted RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 TEX28O15482 410 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 LDB2O43679 373 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 RPP40O75818 363 aaKnown RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 HSPA4LO95757 839 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 LRG1P02750 347 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 SLC35E2BP0CK96 405 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 ALOX15P16050 662 aaPredicted RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 CALB2P22676 271 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 TARSP26639 723 aaKnown RBP11.33□□□□□ -0.6
LIG3-204ENST00000585740 GABRB3P28472 473 aa11.33□□□□□ -0.6
LIG3-204ENST00000585740 SERPINB3P29508 390 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms