RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	TTC7B	Q86TV6	843 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	LUZP1	Q86V48	1076 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	NLRP14	Q86W24	1093 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	FSTL5	Q8N475	847 aa	Predicted RBP	13.73	□□□□□ -0.21
SS18-222	ENST00000582792	FBXO39	Q8N4B4	442 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	EXD3	Q8N9H8	876 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	TP53I13	Q8NBR0	393 aa	Predicted RBP	13.73	□□□□□ -0.21
SS18-222	ENST00000582792	CXorf40A	Q8TE69	158 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	GFM1	Q96RP9	751 aa	Known RBP	13.73	□□□□□ -0.21
SS18-222	ENST00000582792	EPAS1	Q99814	870 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	MAGEH1	Q9H213	219 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	VPS16	Q9H269	839 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	EPB41L5	Q9HCM4	733 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	MBNL1	Q9NR56	388 aa	Known RBP	13.73	□□□□□ -0.21
SS18-222	ENST00000582792	TMEM248	Q9NWD8	314 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	GULP1	Q9UBP9	304 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	OR12D3	Q9UGF7	316 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	RABGEF1	Q9UJ41	708 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	HPCAL4	Q9UM19	191 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	DOLK	Q9UPQ8	538 aa		13.73	□□□□□ -0.21
SS18-222	ENST00000582792	FAM170A	A1A519	330 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792		D6RAR5	112 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	TMX2-CTNND1	H3BSU7	103 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	NOBOX	O60393	691 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	GJB6	O95452	261 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	LSM8	O95777	96 aa	Known RBP	13.72	□□□□□ -0.21
SS18-222	ENST00000582792	ALPI	P09923	528 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	ATP1A3	P13637	1013 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	UGT1A5	P35504	534 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	CSRP3	P50461	194 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	PEX5	P50542	639 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	HK3	P52790	923 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	ATP11A	P98196	1134 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	NFATC3	Q12968	1075 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	LINC00303	Q3SY05	128 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.72	□□□□□ -0.21
SS18-222	ENST00000582792	RWDD4	Q6NW29	188 aa	Known RBP	13.72	□□□□□ -0.21
SS18-222	ENST00000582792	DPY19L2P1	Q6NXN4	242 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	LVRN	Q6Q4G3	990 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	XKR5	Q6UX68	686 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	SDR16C5	Q8N3Y7	309 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	KY	Q8NBH2	561 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	MSANTD4	Q8NCY6	345 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	PCDH19	Q8TAB3	1148 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	SCG3	Q8WXD2	468 aa	Known RBP	13.72	□□□□□ -0.21
SS18-222	ENST00000582792	CCDC74A	Q96AQ1	378 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	ERGIC2	Q96RQ1	377 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	STRADB	Q9C0K7	418 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	RTN4	Q9NQC3	1192 aa	Known RBP	13.72	□□□□□ -0.21
SS18-222	ENST00000582792	DNAI1	Q9UI46	699 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	NEU3	Q9UQ49	428 aa		13.72	□□□□□ -0.21
SS18-222	ENST00000582792	TLN1	Q9Y490	2541 aa	Known RBP	13.72	□□□□□ -0.21
SS18-222	ENST00000582792	AHCTF1	Q8WYP5	2266 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792		A0A1B0GTH6	734 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792		A0A1W2PQM1	296 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	TMEM110-MUSTN1	A8MSY1	372 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	PES1	O00541	588 aa	Known RBP	13.71	□□□□□ -0.21
SS18-222	ENST00000582792	RAMP2	O60895	175 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	CTSE	P14091	401 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	ITIH2	P19823	946 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	CCKBR	P32239	447 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	ADRA1B	P35368	520 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	INHBC	P55103	352 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	CCL7	P80098	99 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	RAPGEF1	Q13905	1077 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	IRF4	Q15306	451 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	ALG11	Q2TAA5	492 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	RAB6C	Q53S08	254 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	TAF3	Q5VWG9	929 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	LEKR1	Q6ZMV7	388 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	USP53	Q70EK8	1073 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	JAML	Q86YT9	394 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	EMC1	Q8N766	993 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	SGF29	Q96ES7	293 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	GDAP1L1	Q96MZ0	367 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	WRAP53	Q9BUR4	548 aa	Known RBP	13.71	□□□□□ -0.21
SS18-222	ENST00000582792	CPEB1	Q9BZB8	566 aa	Known RBP	13.71	□□□□□ -0.21
SS18-222	ENST00000582792	EDEM3	Q9BZQ6	932 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	FOXP3	Q9BZS1	431 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	FAM117A	Q9C073	453 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	TTYH3	Q9C0H2	523 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	RAB6C	Q9H0N0	254 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	METTL5	Q9NRN9	209 aa	Known RBP	13.71	□□□□□ -0.21
SS18-222	ENST00000582792	WDR70	Q9NW82	654 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	SIRPG	Q9P1W8	387 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	DKK3	Q9UBP4	350 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	SIK3	Q9Y2K2	1263 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	MFHAS1	Q9Y4C4	1052 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	HEMK1	Q9Y5R4	338 aa	Predicted RBP	13.71	□□□□□ -0.21
SS18-222	ENST00000582792	FLNC	Q14315	2725 aa		13.71	□□□□□ -0.21
SS18-222	ENST00000582792	LRP4	O75096	1905 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	PTPN13	Q12923	2485 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	13.7	□□□□□ -0.22
SS18-222	ENST00000582792	FAM72C	H0Y354	149 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	NVL	O15381	856 aa	Known RBP	13.7	□□□□□ -0.22
SS18-222	ENST00000582792	KDELR3	O43731	214 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	TMCC1	O94876	653 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	LRIG2	O94898	1065 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	RASGRP1	O95267	797 aa		13.7	□□□□□ -0.22
SS18-222	ENST00000582792	ITGB2	P05107	769 aa		13.7	□□□□□ -0.22

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