RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KRTAP9-8Q9BYQ0 159 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 NUF2Q9BZD4 464 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 CYSLTR2Q9NS75 346 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 PPP1R14DQ9NXH3 145 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 SLC13A4Q9UKG4 626 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 DYTNA2CJ06 578 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 NPHP1O15259 732 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 VNN2O95498 520 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 CH25HO95992 272 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 GALTP07902 379 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 FGF3P11487 239 aaPredicted RBP6.54□□□□□ -1.36
SS18-214ENST00000580003 ITGB8P26012 769 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 CXCR3P49682 368 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 SEC61A1P61619 476 aaKnown RBP6.54□□□□□ -1.36
SS18-214ENST00000580003 GALNT2Q10471 571 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 NFATC4Q14934 902 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 CRELD2Q6UXH1 353 aaPredicted RBP6.54□□□□□ -1.36
SS18-214ENST00000580003 CREB3L2Q70SY1 520 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 PARP16Q8N5Y8 322 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 HTRA1Q92743 480 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 ZBTB10Q96DT7 871 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 MMTAG2Q9BU76 263 aaKnown RBP6.54□□□□□ -1.36
SS18-214ENST00000580003 SLCO5A1Q9H2Y9 848 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 C6orf106Q9H6K1 298 aaPredicted RBP6.54□□□□□ -1.36
SS18-214ENST00000580003 CTNNAL1Q9UBT7 734 aa6.54□□□□□ -1.36
SS18-214ENST00000580003 SLC25A10Q9UBX3 287 aaPredicted RBP6.54□□□□□ -1.36
SS18-214ENST00000580003 TEX13CA0A0J9YWL9 993 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 TIMM23O14925 209 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 COX7A2P14406 83 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 GGT5P36269 586 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 PAFAH1B1P43034 410 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 CLDN2P57739 230 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 SOWAHAQ2M3V2 549 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 CAPRIN2Q6IMN6 1127 aaKnown RBP6.53□□□□□ -1.36
SS18-214ENST00000580003 TCP11L2Q8N4U5 519 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 AADATQ8N5Z0 425 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 ARRDC2Q8TBH0 407 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 KIF1BPQ96EK5 621 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 LRFN5Q96NI6 719 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 BBS4Q96RK4 519 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 VEZTQ9HBM0 779 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 WASH6PQ9NQA3 447 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 SMYD2Q9NRG4 433 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 A3GALT2U3KPV4 340 aa6.53□□□□□ -1.36
SS18-214ENST00000580003 A0A0U1RQF3 1178 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 PLEKHD1A6NEE1 506 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 TACC1O75410 805 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 NDUFB4O95168 129 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 ART1P52961 327 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 UFM1P61960 85 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 TRAF3Q13114 568 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 BAK1Q16611 211 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 CPLX2Q6PUV4 134 aaKnown RBP6.52□□□□□ -1.37
SS18-214ENST00000580003 SHFQ7M4L6 423 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 ESX1Q8N693 406 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 NEXN-AS1Q8NBZ9 246 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 RTP4Q96DX8 246 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 MPHOSPH8Q99549 860 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 MXRA8Q9BRK3 442 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 C20orf141Q9NUB4 165 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 GJD2Q9UKL4 321 aa6.52□□□□□ -1.37
SS18-214ENST00000580003 HEXAP06865 529 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 IRF1P10914 325 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 FOXD4Q12950 439 aaPredicted RBP6.51□□□□□ -1.37
SS18-214ENST00000580003 HIST2H2ACQ16777 129 aaPredicted RBP6.51□□□□□ -1.37
SS18-214ENST00000580003 IZUMO4Q1ZYL8 232 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 KLHL22Q53GT1 634 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 LRRC8EQ6NSJ5 796 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 CCDC129Q6ZRS4 1044 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 RNF125Q96EQ8 232 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 CTAGE1Q96RT6 745 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 FIZ1Q96SL8 496 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 OCIAD1Q9NX40 245 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 PDP2Q9P2J9 529 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 GTF2A1LQ9UNN4 478 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 FAM96BQ9Y3D0 163 aa6.51□□□□□ -1.37
SS18-214ENST00000580003 TRIP12Q14669 1992 aaPredicted RBP6.5□□□□□ -1.37
SS18-214ENST00000580003 IGLV5-52A0A0A0MRZ9 124 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 ZNF12P17014 697 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 CD58P19256 250 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 CHATP28329 748 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 PIGAP37287 484 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 PEX5P50542 639 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 BNC1Q01954 994 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 PPP2R5BQ15173 497 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 RBM23Q86U06 439 aaKnown RBP6.5□□□□□ -1.37
SS18-214ENST00000580003 ST8SIA4Q92187 359 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 SNAPC3Q92966 411 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 TBATAQ96M53 351 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 ZNF570Q96NI8 536 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 HEMGNQ9BXL5 484 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 KRTAP1-5Q9BYS1 174 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 HSPB7Q9UBY9 170 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 ARHGAP26Q9UNA1 814 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 LRP12Q9Y561 859 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 PCDHGB1Q9Y5G3 927 aa6.5□□□□□ -1.37
SS18-214ENST00000580003 A0A0U1RQJ8 604 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 J3KR12 359 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 EDN2P20800 178 aa6.49□□□□□ -1.37
SS18-214ENST00000580003 ARL1P40616 181 aaPredicted RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms