RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SUGP1Q8IWZ8 645 aaKnown RBP13.8□□□□□ -0.2
CCDC40-209ENST00000573474 SLC44A3Q8N4M1 653 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 GOLGA6L1Q8N7Z2 621 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 RMDN1Q96DB5 314 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 CHFRQ96EP1 664 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 MYO19Q96H55 970 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 CYTH2Q99418 400 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 SH3GL2Q99962 352 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 ACSS3Q9H6R3 686 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 PPCSQ9HAB8 311 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 PLAC1Q9HBJ0 212 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 CHRAC1Q9NRG0 131 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 RABGEF1Q9UJ41 708 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 FAM50BQ9Y247 325 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 TCAF1Q9Y4C2 921 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 RPS6KL1Q9Y6S9 549 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 EXOC1LA0A1B0GW35 172 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 TCRBV9S1A1TA0A576 114 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 HEATR9A2RTY3 570 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 WASH3PC4AMC7 463 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 RASGRF2O14827 1237 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 HTRA2O43464 458 aaPredicted RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 BNIP3LO60238 219 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 FZD6O60353 706 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 ALDH1A2O94788 518 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 MYZAPP0CAP1 466 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 SERPINA4P29622 427 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 CCNHP51946 323 aaPredicted RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 RPL26P61254 145 aaKnown RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 GALNT3Q14435 633 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 CRYMQ14894 314 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 E2F5Q15329 346 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 KLHL38Q2WGJ6 581 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 KRT71Q3SY84 523 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 FNDC3BQ53EP0 1204 aaKnown RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 HSP90B2PQ58FF3 399 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 NAIF1Q69YI7 327 aaPredicted RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 DPY19L3Q6ZPD9 716 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 Q6ZVU0 165 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 NLRP9Q7RTR0 991 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 CAMK1DQ8IU85 385 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 LPCAT1Q8NF37 534 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 OR2A12Q8NGT7 310 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 OR6K2Q8NGY2 324 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 PDCD6IPQ8WUM4 868 aaKnown RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 ZBTB9Q96C00 473 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 MED4Q9NPJ6 270 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 MOCS1Q9NZB8 636 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 PRKAG3Q9UGI9 489 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 FETUBQ9UGM5 382 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 RPL26L1Q9UNX3 145 aaKnown RBP13.79□□□□□ -0.2
CCDC40-209ENST00000573474 FAM169AQ9Y6X4 670 aa13.79□□□□□ -0.2
CCDC40-209ENST00000573474 TLDC2A0PJX2 215 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 ANKRD66B4E2M5 251 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 TRAFD1O14545 582 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 PGLSO95336 258 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 PIGNO95427 931 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SYF2O95926 243 aaKnown RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 PDHA1P08559 390 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 PRKCHP24723 683 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 TNFRSF4P43489 277 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SOX9P48436 509 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 GALK1P51570 392 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 EPHB1P54762 984 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SEPT6Q14141 434 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 QPCTQ16769 361 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 PTCRAQ6ISU1 281 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 ZNF449Q6P9G9 518 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 CES3Q6UWW8 571 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 BRSK1Q8TDC3 778 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 DNASE1L2Q92874 299 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 ZNF669Q96BR6 464 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 ZNF641Q96N77 438 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 FCRL3Q96P31 734 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 P2RY13Q9BPV8 354 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 HEPHQ9BQS7 1158 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 TRIM56Q9BRZ2 755 aaKnown RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SUV39H2Q9H5I1 410 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 C8orf33Q9H7E9 229 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 TMBIM4Q9HC24 238 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 FAM53CQ9NYF3 392 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 THAP10Q9P2Z0 257 aaPredicted RBP13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SLC24A2Q9UI40 661 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 PCDHB9Q9Y5E1 797 aa13.78□□□□□ -0.2
CCDC40-209ENST00000573474 SZT2Q5T011 3432 aa13.77□□□□□ -0.2
CCDC40-209ENST00000573474 EDDM13A0A1B0GTR0 161 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 ZCWPW2A0A1B0GU75 182 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 A0A1W2PQ67 120 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 MROH6A6NGR9 719 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 FAM159BA6NKW6 160 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 GOLGA8KD6RF30 607 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 SPECC1L-ADORA2AF8WAN1 911 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 PAPSS2O95340 614 aaPredicted RBP13.77□□□□□ -0.21
CCDC40-209ENST00000573474 NMBRP28336 390 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 GKP32189 559 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 GRIA4P48058 902 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 COL4A3Q01955 1670 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF234Q14588 700 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 LONRF1Q17RB8 773 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms