RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 LRRK1Q38SD2 2015 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 CPED1A4D0V7 1026 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 BUB1BO60566 1050 aaPredicted RBP16.23■□□□□ 0.19
CLN3-229ENST00000567963 PRAMEF11O60813 436 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 USP12O75317 370 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 CSO75390 466 aaKnown RBP16.23■□□□□ 0.19
CLN3-229ENST00000567963 MPOP05164 745 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 XPAP23025 273 aaPredicted RBP16.23■□□□□ 0.19
CLN3-229ENST00000567963 PSMA2P25787 234 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 ADKP55263 362 aaKnown RBP16.23■□□□□ 0.19
CLN3-229ENST00000567963 TYRO3Q06418 890 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 C1orf61Q13536 156 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 CA9Q16790 459 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 FAXCQ5TGI0 409 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 GUSBP11Q6P575 273 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 MACC1Q6ZN28 852 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 CELF6Q96J87 481 aaKnown RBP16.23■□□□□ 0.19
CLN3-229ENST00000567963 ZNF641Q96N77 438 aaPredicted RBP16.23■□□□□ 0.19
CLN3-229ENST00000567963 SLC13A1Q9BZW2 595 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 SLC39A8Q9C0K1 460 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 RAI2Q9Y5P3 530 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 SHROOM3Q8TF72 1996 aa16.23■□□□□ 0.19
CLN3-229ENST00000567963 TSPAN11A1L157 253 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 LRRC53A6NM62 1247 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 EIF3CLB5ME19 914 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 LMO7DNF2Z398 122 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 EEF2KO00418 725 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 LZTS3O60299 673 aaPredicted RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 MBD3O95983 291 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 PEX5P50542 639 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 PAPOLAP51003 745 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 PPARDQ03181 441 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 LRRC14Q15048 493 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 IRF4Q15306 451 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 NR0B2Q15466 257 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 EFL1Q7Z2Z2 1120 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 LSMEM2Q8N112 164 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 ZNF578Q96N58 590 aaPredicted RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 EIF3CQ99613 913 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 LRRC61Q9BV99 259 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 CLPBQ9H078 707 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 NAT10Q9H0A0 1025 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 DHX35Q9H5Z1 703 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 PCDH12Q9NPG4 1184 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 PCSK1NQ9UHG2 260 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 COQ6Q9Y2Z9 468 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 COL27A1Q8IZC6 1860 aaPredicted RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 TMEM191CA6NGB0 347 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 ARHGAP42A6NI28 874 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 TMEM110-MUSTN1A8MSY1 372 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 YY2O15391 372 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 ATMINO43313 823 aaPredicted RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 PALMO75781 387 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 DXOO77932 396 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 TSHRP16473 764 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 LSSP48449 732 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 CSNK1DP48730 415 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 GABREP78334 506 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 CCDC173Q0VFZ6 552 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 ISXQ2M1V0 245 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 WSCD2Q2TBF2 565 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 ANO6Q4KMQ2 910 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 C6orf132Q5T0Z8 1188 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 BRAT1Q6PJG6 821 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 CAMK1DQ8IU85 385 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 TSEN2Q8NCE0 465 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 TPCN2Q8NHX9 752 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 GLMNQ92990 594 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 TUBGCP5Q96RT8 1024 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 PEBP4Q96S96 227 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 BPIFA3Q9BQP9 254 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 SNRNP25Q9BV90 132 aaKnown RBP16.22■□□□□ 0.19
CLN3-229ENST00000567963 HAUS4Q9H6D7 363 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 POLR1BQ9H9Y6 1135 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 AIPL1Q9NZN9 384 aa16.22■□□□□ 0.19
CLN3-229ENST00000567963 MUSKO15146 869 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 DAPK3O43293 454 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 RNF8O76064 485 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 FTLP02792 175 aaPredicted RBP16.21■□□□□ 0.19
CLN3-229ENST00000567963 ANXA6P08133 673 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 GZMAP12544 262 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 C6P13671 934 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 ERCC2P18074 760 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 RGRP47804 291 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 RPIAP49247 311 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 LIG3P49916 1009 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 BLKP51451 505 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 TLE3Q04726 772 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 INPP5AQ14642 412 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 AGERQ15109 404 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 PERM1Q5SV97 790 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 AFMIDQ63HM1 303 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 ERAP2Q6P179 960 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 RFX8Q6ZV50 586 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 CYP4V2Q6ZWL3 525 aaPredicted RBP16.21■□□□□ 0.19
CLN3-229ENST00000567963 ZNF571Q7Z3V5 609 aaPredicted RBP16.21■□□□□ 0.19
CLN3-229ENST00000567963 SRLQ86TD4 932 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 ZSWIM9Q86XI8 627 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 SPACA3Q8IXA5 215 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 SLC35F3Q8IY50 421 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms