RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 NOD2Q9HC29 1040 aa12.28□□□□□ -0.44
SF3B3-208ENST00000567250 TTC7AQ9ULT0 858 aaPredicted RBP12.28□□□□□ -0.44
SF3B3-208ENST00000567250 RALGAPA1Q6GYQ0 2036 aa12.28□□□□□ -0.44
SF3B3-208ENST00000567250 NUMA1Q14980 2115 aa12.28□□□□□ -0.44
SF3B3-208ENST00000567250 GOLGA6CA6NDK9 693 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 GOLGA6BA6NDN3 693 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 HAX1O00165 279 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 PLK4O00444 970 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 TRAFD1O14545 582 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 HTRA2O43464 458 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 LIASO43766 372 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 OPHN1O60890 802 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 FSBPO95073 299 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 PCDH8O95206 1070 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RETP07949 1114 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 GOLGA6DP0CG33 693 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 GNSP15586 552 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 CD86P42081 329 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 CCR5P51681 352 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 EPHB1P54762 984 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RPL26P61254 145 aaKnown RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 WASHC5Q12768 1159 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 TRAF2Q12933 501 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 CCNG2Q16589 344 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 LPAL2Q16609 132 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 UGP2Q16851 508 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 P3H1Q32P28 736 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 USP45Q70EL2 814 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 ARMCX6Q7L4S7 300 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 PID1Q7Z2X4 250 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 ADAT2Q7Z6V5 191 aaKnown RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 TTC7BQ86TV6 843 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 CAMK1DQ8IU85 385 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RGL4Q8IZJ4 473 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 ZNF567Q8N184 647 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 CNTD1Q8N815 330 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 SUMF1Q8NBK3 374 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 ARRDC2Q8TBH0 407 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 IMP4Q96G21 291 aaKnown RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 SPATA13Q96N96 652 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 FAM118BQ9BPY3 351 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 HINFPQ9BQA5 517 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 GBA3Q9H227 469 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 GLOD4Q9HC38 313 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 VPS45Q9NRW7 570 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 GOLGA6AQ9NYA3 693 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RSPH14Q9UHP6 348 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RAPGEFL1Q9UHV5 662 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 DNPEPQ9ULA0 475 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RPL26L1Q9UNX3 145 aaKnown RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.27□□□□□ -0.45
SF3B3-208ENST00000567250 PCDHB9Q9Y5E1 797 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 PCDHGC4Q9Y5F7 938 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 RAI2Q9Y5P3 530 aa12.27□□□□□ -0.45
SF3B3-208ENST00000567250 ABCA7Q8IZY2 2146 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 FRYLO94915 3013 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 TCRBV7S2A1N4TA0A589 114 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PRR23AA6NEV1 266 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 METTL12A8MUP2 240 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 LRP3O75074 770 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 GJB3O75712 270 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ANXA9O76027 345 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PGLSO95336 258 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 CYP2A6P11509 494 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PRLRP16471 622 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 NFKB1P19838 968 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 STIP1P31948 543 aaKnown RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ABL2P42684 1182 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PTGER3P43115 390 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 GRIA4P48058 902 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 TAS2R38P59533 333 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 RPS21P63220 83 aaKnown RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 CREB5Q02930 508 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PRPSAP1Q14558 356 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 SETMARQ53H47 684 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PAPD7Q5XG87 772 aaKnown RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 DRICH1Q6PGQ1 229 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ARHGEF18Q6ZSZ5 1173 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 B4GALNT4Q76KP1 1039 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PRPF39Q86UA1 669 aaKnown RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 HORMAD1Q86X24 394 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 SYT12Q8IV01 421 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 SLC41A1Q8IVJ1 513 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ACTRT1Q8TDG2 376 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 CXorf40AQ8TE69 158 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ATG4AQ8WYN0 398 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 VOPP1Q96AW1 172 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 BIRC7Q96CA5 298 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 IFT43Q96FT9 208 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 FEM1CQ96JP0 617 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 FCRL5Q96RD9 977 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 WDR24Q96S15 920 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 TMEM121Q9BTD3 319 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 C1QTNF7Q9BXJ2 289 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 FSD1LQ9BXM9 530 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 ADGRE3Q9BY15 652 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 C6orf106Q9H6K1 298 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-208ENST00000567250 PCDH9Q9HC56 1237 aa12.26□□□□□ -0.45
SF3B3-208ENST00000567250 FAM153AQ9UHL3 310 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms