RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SCNN1BP51168 640 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 NXPH1P58417 271 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 SLC10A7Q0GE19 358 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 GALNT2Q10471 571 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 IFI16Q16666 785 aaKnown RBP13.53□□□□□ -0.24
CLK3-216ENST00000564468 SEL1L3Q68CR1 1132 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 NCBP2-AS2Q69YL0 99 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 ERAP2Q6P179 960 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 LAYNQ6UX15 382 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 CPNE8Q86YQ8 564 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 NAXDQ8IW45 347 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 TP53INP2Q8IXH6 220 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 TXLNBQ8N3L3 684 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 TMEM145Q8NBT3 493 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 CXorf40AQ8TE69 158 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 SETD7Q8WTS6 366 aaKnown RBP13.53□□□□□ -0.24
CLK3-216ENST00000564468 KLK6Q92876 244 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 LENG8Q96PV6 779 aaPredicted RBP13.53□□□□□ -0.24
CLK3-216ENST00000564468 RNF157Q96PX1 679 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 C1QTNF2Q9BXJ5 285 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 IL21RQ9HBE5 538 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 AMACRQ9UHK6 382 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 FNDC3AQ9Y2H6 1198 aaKnown RBP13.53□□□□□ -0.24
CLK3-216ENST00000564468 SPEGQ15772 3267 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 IGF2RP11717 2491 aa13.53□□□□□ -0.24
CLK3-216ENST00000564468 ARID1BQ8NFD5 2236 aaPredicted RBP13.52□□□□□ -0.24
CLK3-216ENST00000564468 A0A1B0GTQ1 180 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 A6NNZ2 444 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 C1QTNF9BB2RNN3 333 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 H0Y8X5 98 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 WNT9AO14904 365 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 PSTPIP1O43586 416 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 MFSD11O43934 449 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 SH3BP5O60239 455 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 SOCS5O75159 536 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 NEBLO76041 1014 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 TM7SF2O76062 418 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 PIGNO95427 931 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 PAK4O96013 591 aaPredicted RBP13.52□□□□□ -0.25
CLK3-216ENST00000564468 C1QTNF9P0C862 333 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 TIMP2P16035 220 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 PRLRP16471 622 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 COMTP21964 271 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 CES1P23141 567 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 CCNCP24863 283 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 GARSP41250 739 aaKnown RBP13.52□□□□□ -0.25
CLK3-216ENST00000564468 MMP13P45452 471 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 FOXC1Q12948 553 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 UGP2Q16851 508 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 DBX2Q6ZNG2 339 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 CAMK1DQ8IU85 385 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 DENND6BQ8NEG7 585 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 RAPGEF5Q92565 580 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 FATE1Q969F0 183 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 VOPP1Q96AW1 172 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 TSGA13Q96PP4 275 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 NUDCD1Q96RS6 583 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 CDC6Q99741 560 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 BAG1Q99933 345 aaPredicted RBP13.52□□□□□ -0.25
CLK3-216ENST00000564468 SCUBE2Q9NQ36 999 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 KLHL11Q9NVR0 708 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLK3-216ENST00000564468 ALG6Q9Y672 507 aa13.52□□□□□ -0.25
CLK3-216ENST00000564468 GOLGA4Q13439 2230 aaKnown RBP13.52□□□□□ -0.25
CLK3-216ENST00000564468 IGLON5A6NGN9 336 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 SOWAHDA6NJG2 315 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 KCNK3O14649 394 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 TOR1BO14657 336 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 FPGTO14772 594 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 APOL1O14791 398 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 MATN3O15232 486 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 BUB1BO60566 1050 aaPredicted RBP13.51□□□□□ -0.25
CLK3-216ENST00000564468 PEX11BO96011 259 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 KRT1P04264 644 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 THEGLP0DJG4 465 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 GRK6P43250 576 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 RGRP47804 291 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 RXRGP48443 463 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 TMEM52BQ4KMG9 183 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 BZW1Q7L1Q6 419 aaKnown RBP13.51□□□□□ -0.25
CLK3-216ENST00000564468 TEX26Q8N6G2 289 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 ECHDC3Q96DC8 303 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 MYOCQ99972 504 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 ATP8A1Q9Y2Q0 1164 aa13.51□□□□□ -0.25
CLK3-216ENST00000564468 CFAP69A5D8W1 941 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 BTNL10A8MVZ5 291 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 RIOK3O14730 519 aaKnown RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 GIPC1O14908 333 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 ITGAVP06756 1048 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 KRT10P13645 584 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 TNNT1P13805 278 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 RABIFP47224 123 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 NAP1L1P55209 391 aaKnown RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 TRIP6Q15654 476 aaKnown RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 C11orf63Q6NUN7 778 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 KYAT3Q6YP21 454 aaKnown RBP13.5□□□□□ -0.25
CLK3-216ENST00000564468 ABI3BPQ7Z7G0 1075 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 DAAM2Q86T65 1068 aa13.5□□□□□ -0.25
CLK3-216ENST00000564468 NDUFAF2Q8N183 169 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms