RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ARL13BQ3SXY8 428 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 KIAA0895LQ68EN5 471 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 SPECC1LQ69YQ0 1117 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 SIGIRRQ6IA17 410 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PPP1R2P3Q6NXS1 205 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 VWA1Q6PCB0 445 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 IYDQ6PHW0 289 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TRIM65Q6PJ69 517 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 IL27RAQ6UWB1 636 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 MEX3BQ6ZN04 569 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 PTCHD4Q6ZW05 846 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 EPM2AIP1Q7L775 607 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 ZNF554Q86TJ5 538 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ADGRG3Q86Y34 549 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CDH26Q8IXH8 852 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 HACE1Q8IYU2 909 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 MAML2Q8IZL2 1156 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 ANKRD52Q8NB46 1076 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CCDC112Q8NEF3 446 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ETNPPLQ8TBG4 499 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 OSCP1Q8WVF1 389 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 SEPT1Q8WYJ6 367 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 KRT35Q92764 455 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TMEM125Q96AQ2 219 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 RGMAQ96B86 450 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 LRRC39Q96DD0 335 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TMA16Q96EY4 203 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 IFT74Q96LB3 600 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 LRGUKQ96M69 825 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CCDC42Q96M95 316 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TRIB1Q96RU8 372 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 HGH1Q9BTY7 390 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 MLPHQ9BV36 600 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 DUSP26Q9BV47 211 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CARD6Q9BX69 1037 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 NFKBIZQ9BYH8 718 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CRNKL1Q9BZJ0 848 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 TRIM2Q9C040 744 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ARHGAP39Q9C0H5 1083 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 SIK2Q9H0K1 926 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 THAP9Q9H5L6 903 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TFB2MQ9H5Q4 396 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 SYNDIG1Q9H7V2 258 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 KCNK13Q9HB14 408 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 NTN4Q9HB63 628 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TUFT1Q9NNX1 390 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 C12orf4Q9NQ89 552 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TAS2R3Q9NYW6 316 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 OR6C2Q9NZP2 312 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PTGFRNQ9P2B2 879 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ASIC3Q9UHC3 531 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ANKRD6Q9Y2G4 727 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PCDHA3Q9Y5H8 950 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 STON1Q9Y6Q2 735 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ATP8B3O60423 1300 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ZNF335Q9H4Z2 1342 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 CYP3A7-CYP3A51PA0A087WV96 503 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ZNF879B4DU55 563 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 KIF28PB7ZC32 967 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 E9PLN8 166 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 H0YCG3 227 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 NPC1O15118 1278 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 SCAMP1O15126 338 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 YY2O15391 372 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 MPPED1O15442 326 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 FMO6PO60774 539 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 PFDN1O60925 122 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 PEX11AO75192 247 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 PGM3O95394 542 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 CLPTM1O96005 669 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 RB1P06400 928 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 GJB1P08034 283 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 KRT7P08729 469 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 QDPRP09417 244 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ANPEPP15144 967 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 NAGAP17050 411 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ATF6P18850 670 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 M6PRP20645 277 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 GATA3P23771 443 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 CYP3A7P24462 503 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 BMI1P35226 326 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 SERPINB6P35237 376 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 MTTPP55157 894 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ELLP55199 621 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 RAB14P61106 215 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 SULT2A1Q06520 285 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 KLC1Q07866 573 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 BFSP1Q12934 665 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 COASYQ13057 564 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ERV3-1Q14264 604 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 AANATQ16613 207 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 UGP2Q16851 508 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 WHAMMP3Q1A5X7 153 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 RGS21Q2M5E4 152 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 PGS1Q32NB8 556 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 C2orf76Q3KRA6 126 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 CD300EQ496F6 205 aaPredicted RBP5.21□□□□□ -1.58
VPS35-205ENST00000563984 CENPPQ6IPU0 288 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 CYB5D1Q6P9G0 228 aa5.21□□□□□ -1.58
VPS35-205ENST00000563984 ZNF783Q6ZMS7 281 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms