RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 C1QTNF2Q9BXJ5 285 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 IL21RQ9HBE5 538 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 AMACRQ9UHK6 382 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 FNDC3AQ9Y2H6 1198 aaKnown RBP13.53□□□□□ -0.24
CLK3-213ENST00000563842 ARID1BQ8NFD5 2236 aaPredicted RBP13.52□□□□□ -0.24
CLK3-213ENST00000563842 A0A1B0GTQ1 180 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 A6NNZ2 444 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 H0Y8X5 98 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 WNT9AO14904 365 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 PSTPIP1O43586 416 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 MFSD11O43934 449 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 SH3BP5O60239 455 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 SOCS5O75159 536 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 NEBLO76041 1014 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 TM7SF2O76062 418 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 PIGNO95427 931 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 PAK4O96013 591 aaPredicted RBP13.52□□□□□ -0.25
CLK3-213ENST00000563842 TIMP2P16035 220 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 PRLRP16471 622 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 COMTP21964 271 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 CES1P23141 567 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 CCNCP24863 283 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 GARSP41250 739 aaKnown RBP13.52□□□□□ -0.25
CLK3-213ENST00000563842 MMP13P45452 471 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 UGP2Q16851 508 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 DBX2Q6ZNG2 339 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 CAMK1DQ8IU85 385 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 DENND6BQ8NEG7 585 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 RAPGEF5Q92565 580 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 FATE1Q969F0 183 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 VOPP1Q96AW1 172 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 TSGA13Q96PP4 275 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 NUDCD1Q96RS6 583 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 CDC6Q99741 560 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 BAG1Q99933 345 aaPredicted RBP13.52□□□□□ -0.25
CLK3-213ENST00000563842 SCUBE2Q9NQ36 999 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 KLHL11Q9NVR0 708 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.52□□□□□ -0.25
CLK3-213ENST00000563842 ALG6Q9Y672 507 aa13.52□□□□□ -0.25
CLK3-213ENST00000563842 GOLGA4Q13439 2230 aaKnown RBP13.52□□□□□ -0.25
CLK3-213ENST00000563842 IGLON5A6NGN9 336 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 SOWAHDA6NJG2 315 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 KCNK3O14649 394 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 TOR1BO14657 336 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 FPGTO14772 594 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 APOL1O14791 398 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 MATN3O15232 486 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 BUB1BO60566 1050 aaPredicted RBP13.51□□□□□ -0.25
CLK3-213ENST00000563842 PEX11BO96011 259 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 KRT1P04264 644 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 THEGLP0DJG4 465 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 GRK6P43250 576 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 RGRP47804 291 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 RXRGP48443 463 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 TMEM52BQ4KMG9 183 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 N4BP2L1Q5TBK1 243 aaPredicted RBP13.51□□□□□ -0.25
CLK3-213ENST00000563842 BZW1Q7L1Q6 419 aaKnown RBP13.51□□□□□ -0.25
CLK3-213ENST00000563842 TEX26Q8N6G2 289 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 ECHDC3Q96DC8 303 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 MYOCQ99972 504 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 ATP8A1Q9Y2Q0 1164 aa13.51□□□□□ -0.25
CLK3-213ENST00000563842 CFAP69A5D8W1 941 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 BTNL10A8MVZ5 291 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 RIOK3O14730 519 aaKnown RBP13.5□□□□□ -0.25
CLK3-213ENST00000563842 GIPC1O14908 333 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 ITGAVP06756 1048 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 KRT10P13645 584 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 TNNT1P13805 278 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 RABIFP47224 123 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 NAP1L1P55209 391 aaKnown RBP13.5□□□□□ -0.25
CLK3-213ENST00000563842 TRIP6Q15654 476 aaKnown RBP13.5□□□□□ -0.25
CLK3-213ENST00000563842 C11orf63Q6NUN7 778 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 KYAT3Q6YP21 454 aaKnown RBP13.5□□□□□ -0.25
CLK3-213ENST00000563842 ABI3BPQ7Z7G0 1075 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 DAAM2Q86T65 1068 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 NDUFAF2Q8N183 169 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 PQLC3Q8N755 202 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 CCNYQ8ND76 341 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 RHBDD1Q8TEB9 315 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 MAML1Q92585 1016 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 HDAC11Q96DB2 347 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 IFT43Q96FT9 208 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 POLR1EQ9GZS1 481 aaKnown RBP13.5□□□□□ -0.25
CLK3-213ENST00000563842 BRD8Q9H0E9 1235 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 NT5MQ9NPB1 228 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 FZD3Q9NPG1 666 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 PCDH12Q9NPG4 1184 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 PCOLCE2Q9UKZ9 415 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 ITM2BQ9Y287 266 aa13.5□□□□□ -0.25
CLK3-213ENST00000563842 COL5A1P20908 1838 aaPredicted RBP13.5□□□□□ -0.25
CLK3-213ENST00000563842 TRAFD1O14545 582 aaPredicted RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
CLK3-213ENST00000563842 MUSKO15146 869 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 MMP20O60882 483 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 TRIM16O95361 564 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 CCNB1P14635 433 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 CR2P20023 1033 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 CA4P22748 312 aa13.49□□□□□ -0.25
CLK3-213ENST00000563842 GSDMDP57764 484 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms