RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RPUSD3Q6P087 351 aaKnown RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 LCTLQ6UWM7 567 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 LRIG3Q6UXM1 1119 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 DENND5BQ6ZUT9 1274 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CYB5R4Q7L1T6 521 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 GPSM1Q86YR5 675 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ARHGAP12Q8IWW6 846 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 DDIASQ8IXT1 998 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CCDC13Q8IYE1 715 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ZBTB8BQ8NAP8 495 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 C11orf65Q8NCR3 313 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 GJC3Q8NFK1 279 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ZNF398Q8TD17 642 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 HDAC7Q8WUI4 952 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 SLC9A6Q92581 669 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 NELL1Q92832 810 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ARHGEF2Q92974 986 aaKnown RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 SMARCE1Q969G3 411 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ABHD1Q96SE0 405 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 YME1L1Q96TA2 773 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 STRA6Q9BX79 667 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 C1QTNF5Q9BXJ0 243 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 AP1M1Q9BXS5 423 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 PLEKHA4Q9H4M7 779 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 KAT14Q9H8E8 782 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ACTR5Q9H9F9 607 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 ERVK-5Q9HDB9 667 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 PDE7BQ9NP56 450 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 SPAG4Q9NPE6 437 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 DDX4Q9NQI0 724 aaKnown RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 RRP7BPQ9NSQ0 103 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 SEMA4GQ9NTN9 838 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 SETD4Q9NVD3 440 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 NKIRAS2Q9NYR9 191 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 NCKIPSDQ9NZQ3 722 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 FBXL17Q9UF56 701 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 GIMAP2Q9UG22 337 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 LAMP3Q9UQV4 416 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 LSM4Q9Y4Z0 139 aaKnown RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 SNX8Q9Y5X2 465 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 MST1RQ04912 1400 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 A0A0U1RQF3 1178 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 LRRC53A6NM62 1247 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 LINC01548A6NM66 108 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 EIF3CLB5ME19 914 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 KLRF2D3W0D1 207 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 H3BQ06 376 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 SH2B2O14492 632 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 SEC14L5O43304 696 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 KLK8O60259 260 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 IPO7O95373 1038 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 RB1P06400 928 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PRR35P0CG20 571 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 CHRNB1P11230 501 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 UNGP13051 313 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 SELLP14151 372 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 GLULP15104 373 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ZNF8P17098 575 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 SRD5A1P18405 259 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 IL11P20809 199 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 YWHAQP27348 245 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 HOXD9P28356 352 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 MPGP29372 298 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 CDAP32320 146 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TNFSF8P32971 234 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SHMT1P34896 483 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 RYKP34925 604 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 NNMTP40261 264 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PSMB10P40306 273 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ARL1P40616 181 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 EIF2DP41214 584 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 PPP3CCP48454 512 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 CLCNKBP51801 687 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PPP5CP53041 499 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 GALCP54803 685 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 YWHAZP63104 245 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 SRSF4Q08170 494 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 GOLGA8DPQ0D2H9 430 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 EPS8Q12929 822 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 STK4Q13043 487 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 RASA2Q15283 850 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 GSTA3Q16772 222 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 CCDC96Q2M329 555 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SMTNL2Q2TAL5 461 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ODF3L2Q3SX64 289 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 CDONQ4KMG0 1287 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ESCO2Q56NI9 601 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ALG10Q5BKT4 473 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SGO1Q5FBB7 561 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ALG10BQ5I7T1 473 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 EARS2Q5JPH6 523 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 RAB41Q5JT25 222 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SPECC1Q5M775 1068 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PRAMEF19Q5SWL8 479 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 VWA5B1Q5TIE3 1220 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TMEM198Q66K66 360 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SUMO4Q6EEV6 95 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SLC30A6Q6NXT4 461 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TMEM71Q6P5X7 295 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms