RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TMPRSS6Q8IU80 811 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 CNTN4Q8IWV2 1026 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 C2CD4AQ8NCU7 369 aaPredicted RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 OR13C4Q8NGS5 318 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 ANKRD49Q8WVL7 239 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 PHF21BQ96EK2 531 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 RNF38Q9H0F5 515 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 CDH19Q9H159 772 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 GEMIN8Q9NWZ8 242 aaKnown RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 PHF24Q9UPV7 400 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 EYSQ5T1H1 3165 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 HEATR9A2RTY3 570 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 F5H5T6 163 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 TBC1D4O60343 1298 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 HNRNPCL1O60812 293 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 SPATA31D3P0C874 917 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 PAMP19021 973 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 ATP5C1P36542 298 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 RGRP47804 291 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 SCNN1BP51168 640 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 PRAMEP78395 509 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 ZNF235Q14590 738 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 UGP2Q16851 508 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 SPATA31D4Q6ZUB0 917 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 DNAJC1Q96KC8 554 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 UBE2OQ9C0C9 1292 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 HIPK3Q9H422 1215 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 YY1AP1Q9H869 796 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 C2orf78A6NCI8 922 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 PDE5AO76074 875 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 ATXN1LP0C7T5 689 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 CCDC166P0CW27 439 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 TFEBP19484 476 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 PTDSS1P48651 473 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 CSRP3P50461 194 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 EPHB1P54762 984 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 LIPMQ5VYY2 423 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 TRIM68Q6AZZ1 485 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 NXNQ6DKJ4 435 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 KIAA0930Q6ICG6 404 aaPredicted RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 LINGO4Q6UY18 593 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 ZYG11AQ6WRX3 759 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 ANKS3Q6ZW76 656 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 CRIPAKQ8N1N5 446 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 RYBPQ8N488 228 aaPredicted RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 TXNDC5Q8NBS9 432 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 HIPK4Q8NE63 616 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 EXT2Q93063 718 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 CCDC124Q96CT7 223 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 IFT43Q96FT9 208 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 ILKAPQ9H0C8 392 aaPredicted RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 ELAC1Q9H777 363 aaKnown RBP10.7□□□□□ -0.7
CUX1-217ENST00000558836 GPAMQ9HCL2 828 aa10.7□□□□□ -0.7
CUX1-217ENST00000558836 DRGXA6NNA5 263 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 COCHO43405 550 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 IGLV3-27P01718 113 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 VEGFBP49765 207 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 CDKN2DP55273 166 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 PPM1LQ5SGD2 360 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 WASHC2DQ5SRD0 308 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 EPGNQ6UW88 154 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 TMEM207Q6UWW9 146 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 SCUBE1Q8IWY4 988 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 ULK2Q8IYT8 1036 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 LSMEM2Q8N112 164 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 STYXQ8WUJ0 223 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 ZNF570Q96NI8 536 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 OLA1Q9NTK5 396 aaKnown RBP10.69□□□□□ -0.7
CUX1-217ENST00000558836 NSMCE4AQ9NXX6 385 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 SLC7A8Q9UHI5 535 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 WASF2Q9Y6W5 498 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 PLXNA3P51805 1871 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 TARM1B6A8C7 271 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 CBX4O00257 560 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 LDB2O43679 373 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 KLHL2O95198 593 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 KCNC1P48547 511 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 IL10RBQ08334 325 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 PLD1Q13393 1074 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 CCDC6Q16204 474 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 FRMD7Q6ZUT3 714 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 CILP2Q8IUL8 1156 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 LRRC49Q8IUZ0 686 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 SLAIN1Q8ND83 568 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 CFAP61Q8NHU2 1237 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 PDCD6IPQ8WUM4 868 aaKnown RBP10.69□□□□□ -0.7
CUX1-217ENST00000558836 POLR1EQ9GZS1 481 aaKnown RBP10.69□□□□□ -0.7
CUX1-217ENST00000558836 ATP13A1Q9HD20 1204 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 TCF7L2Q9NQB0 619 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 DNAJC28Q9NX36 388 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 MCM8Q9UJA3 840 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 PLA2G4CQ9UP65 541 aa10.69□□□□□ -0.7
CUX1-217ENST00000558836 ZNF840PA6NDX5 716 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 ACSL4O60488 711 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 TBX10O75333 385 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 SKAP2O75563 359 aaPredicted RBP10.68□□□□□ -0.7
CUX1-217ENST00000558836 WFS1O76024 890 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 MT-CO1P00395 513 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 BMP1P13497 986 aa10.68□□□□□ -0.7
CUX1-217ENST00000558836 GNAZP19086 355 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms