RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RTL10Q7L3V2 364 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CTAGE6Q86UF2 777 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 NT5DC3Q86UY8 548 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 MAP7D3Q8IWC1 876 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CTAGE4Q8IX94 777 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 RHOT1Q8IXI2 618 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SIX6OS1Q8N1H7 587 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 ARHGAP18Q8N392 663 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SDR16C5Q8N3Y7 309 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 WDTC1Q8N5D0 677 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 NIPA2Q8N8Q9 360 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 GLB1L3Q8NCI6 653 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 FAM71BQ8TC56 605 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SPPL2BQ8TCT7 592 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 LINC01599Q8WXQ3 324 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 IRGQQ8WZA9 623 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 TFAP2BQ92481 460 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CENPIQ92674 756 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 ZNF689Q96CS4 500 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 MCRS1Q96EZ8 462 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 ASIC4Q96FT7 647 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 HES6Q96HZ4 224 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SAMD11Q96NU1 681 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 YME1L1Q96TA2 773 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 C11orf70Q9BRQ4 267 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 TTPALQ9BTX7 342 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CNPPD1Q9BV87 410 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 PACSIN1Q9BY11 444 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CARD9Q9H257 536 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 FBXO44Q9H4M3 255 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 GOLGA2P5Q9HBQ8 144 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CSNK1G1Q9HCP0 422 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 SAYSD1Q9NPB0 183 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 NECTIN3Q9NQS3 549 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 CNGB3Q9NQW8 809 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 IRAK4Q9NWZ3 460 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 TAS2R14Q9NYV8 317 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 ANAPC7Q9UJX3 599 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 MTUS1Q9ULD2 1270 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 TTC7AQ9ULT0 858 aaPredicted RBP5.28□□□□□ -1.56
LDLR-209ENST00000558528 STAP1Q9ULZ2 295 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 DUSP10Q9Y6W6 482 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 PLXNA3P51805 1871 aa5.28□□□□□ -1.56
LDLR-209ENST00000558528 MCM3APO60318 1980 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 ASPMQ8IZT6 3477 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 A0A087X0M5 115 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 A0A1B0GX30 115 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 TMEM191CA6NGB0 347 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 A6NLC8 198 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 C9orf172C9J069 976 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 CCDC188H7C350 402 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 NDC80O14777 642 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 PPEF2O14830 753 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 PSTPIP1O43586 416 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 DCXO43602 365 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 LPXNO60711 386 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 OPHN1O60890 802 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 HSF2BPO75031 334 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 PHF2O75151 1096 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 RTN3O95197 1032 aaPredicted RBP5.27□□□□□ -1.57
LDLR-209ENST00000558528 F9P00740 461 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 RB1P06400 928 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 MYL4P12829 197 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 CSF2RAP15509 400 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 COMTP21964 271 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 LMO2P25791 158 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 CTNNA2P26232 953 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 ADORA2BP29275 332 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 SDC4P31431 198 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 PCK1P35558 622 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 BRCC3P46736 316 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 SLC11A1P49279 550 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 ZNF135P52742 658 aaPredicted RBP5.27□□□□□ -1.57
LDLR-209ENST00000558528 AIF1P55008 147 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 SUMO3P55854 103 aaPredicted RBP5.27□□□□□ -1.57
LDLR-209ENST00000558528 EGR3Q06889 387 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 CTXN3Q4LDR2 81 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 GLE1Q53GS7 698 aaKnown RBP5.27□□□□□ -1.57
LDLR-209ENST00000558528 MDH1BQ5I0G3 518 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 AGAP9Q5VTM2 703 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 FAM171A1Q5VUB5 890 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 TPGS2Q68CL5 300 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 DENND1BQ6P3S1 775 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 FUT10Q6P4F1 479 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 FBXO38Q6PIJ6 1188 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.27□□□□□ -1.57
LDLR-209ENST00000558528 POLNQ7Z5Q5 900 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 ZAR1Q86SH2 424 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 TADA2BQ86TJ2 420 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 SLCO6A1Q86UG4 719 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 CEP57Q86XR8 500 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 XYLT1Q86Y38 959 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 ZNF280BQ86YH2 543 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 PSTKQ8IV42 348 aaKnown RBP5.27□□□□□ -1.57
LDLR-209ENST00000558528 RCOR2Q8IZ40 523 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 C12orf29Q8N999 325 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 LRRC57Q8N9N7 239 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 NETO2Q8NC67 525 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 CCDC26Q8TAB7 109 aa5.27□□□□□ -1.57
LDLR-209ENST00000558528 UBA3Q8TBC4 463 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms