RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NCKIPSDQ9NZQ3 722 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 PCDHGA7Q9Y5G6 932 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 AP4B1Q9Y6B7 739 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 A0A1W2PQH9 124 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 E9PAM4 449 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PEX1O43933 1283 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PIRTP0C851 137 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 ETFBP38117 255 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 CDKN2DP55273 166 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 DSC2Q02487 901 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 ADGRE1Q14246 886 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PTK2BQ14289 1009 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 GPR158Q5T848 1215 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 CIR1Q86X95 450 aaPredicted RBP12.98□□□□□ -0.33
LDLR-207ENST00000558013 APLFQ8IW19 511 aaPredicted RBP12.98□□□□□ -0.33
LDLR-207ENST00000558013 OR6P1Q8NGX9 317 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PIP4K2CQ8TBX8 421 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 LRCH3Q96II8 777 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 SERPINI1Q99574 410 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 FAM192AQ9GZU8 254 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 VCX3BQ9H321 246 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 ALG9Q9H6U8 611 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 HADHAP40939 763 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PDAP1Q13442 181 aaKnown RBP12.98□□□□□ -0.33
LDLR-207ENST00000558013 DDR2Q16832 855 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 UGP2Q16851 508 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 AGKQ53H12 422 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 ALFQ53S48 1182 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PIK3R6Q5UE93 754 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 SPRYD7Q5W111 196 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 RYBPQ8N488 228 aaPredicted RBP12.98□□□□□ -0.33
LDLR-207ENST00000558013 METTL25Q8N6Q8 603 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 OR52K2Q8NGK3 314 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 OR13J1Q8NGT2 312 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PDCD6IPQ8WUM4 868 aaKnown RBP12.98□□□□□ -0.33
LDLR-207ENST00000558013 C3orf30Q96M34 536 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 PKMYT1Q99640 499 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 MRPL57Q9BQC6 102 aaKnown RBP12.98□□□□□ -0.33
LDLR-207ENST00000558013 TRIM8Q9BZR9 551 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 OCEL1Q9H607 264 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 MID2Q9UJV3 735 aa12.98□□□□□ -0.33
LDLR-207ENST00000558013 SLC4A1P02730 911 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 TFAP2AP05549 437 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 CCR1P32246 355 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 RAB27AP51159 221 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 COG7P83436 770 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 MYBPC1Q00872 1141 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 TECRLQ5HYJ1 363 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 MANEALQ5VSG8 457 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 OVOS1Q6IE37 1185 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 ZNF354CQ86Y25 554 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 CEP70Q8NHQ1 597 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 ACBD6Q9BR61 282 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 RRN3Q9NYV6 651 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 C6orf203Q9P0P8 240 aaPredicted RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 VTI1BQ9UEU0 232 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 PRORSD1PA6NEY8 169 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 PEX11BO96011 259 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 PRSS56P0CW18 603 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 ODC1P11926 461 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 ATP5F1P24539 256 aaPredicted RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 PSME3P61289 254 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 POTEHQ6S545 545 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 CUZD1Q86UP6 607 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 KLHDC8BQ8IXV7 354 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 PELI3Q8N2H9 469 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 GRIN3AQ8TCU5 1115 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 HDAC10Q969S8 669 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 HMCESQ96FZ2 354 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 MAELQ96JY0 434 aaKnown RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 CENPKQ9BS16 269 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 UBE2OQ9C0C9 1292 aaKnown RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 IL1RL2Q9HB29 575 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 NSMCE4AQ9NXX6 385 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 NYNRINQ9P2P1 1898 aaKnown RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 PADI3Q9ULW8 664 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 LZTS1Q9Y250 596 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 SLC45A1Q9Y2W3 748 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 M0QZ92 97 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 TRPA1O75762 1119 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 SOAT2O75908 522 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 BCAS2O75934 225 aaPredicted RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 SIX3O95343 332 aaPredicted RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 COL6A2P12110 1019 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 GEMP55040 296 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 MFN1Q8IWA4 741 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 TRPV1Q8NER1 839 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 LRTOMTQ8WZ04 291 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 PRPF18Q99633 342 aaKnown RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 SYT17Q9BSW7 474 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 CCDC28BQ9BUN5 200 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 GRIP2Q9C0E4 1043 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 ABI2Q9NYB9 513 aaPredicted RBP12.97□□□□□ -0.33
LDLR-207ENST00000558013 ACTL7AQ9Y615 435 aa12.97□□□□□ -0.33
LDLR-207ENST00000558013 PRSS51A0A1B0GVH4 220 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 IPO13O94829 963 aaKnown RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 SNUPNO95149 360 aaKnown RBP12.96□□□□□ -0.33
LDLR-207ENST00000558013 HOXC8P31273 242 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 GRK4P32298 578 aa12.96□□□□□ -0.33
LDLR-207ENST00000558013 SOX11P35716 441 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms