RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GALNT3Q14435 633 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 KPNB1Q14974 876 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ANO4Q32M45 955 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 RAPH1Q70E73 1250 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SLC41A1Q8IVJ1 513 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 C10orf107Q8IVU9 208 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ARID3BQ8IVW6 561 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 VPS39Q96JC1 886 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TOX2Q96NM4 488 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 YME1L1Q96TA2 773 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 STOML1Q9UBI4 398 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 AFF4Q9UHB7 1163 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 EYSQ5T1H1 3165 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 hCG_2014768A0A024R1R8 64 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 OR51F1A6NGY5 319 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 WASH4PA8MWX3 477 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ATP5HO75947 161 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 AHSGP02765 367 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 BPGMP07738 259 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 GJA1P17302 382 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 HTR7P34969 479 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SPRP35270 261 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SERINC3Q13530 473 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 HNRNPDQ14103 355 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 PCID2Q5JVF3 399 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 GRTP1Q5TC63 336 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 KDELC1Q6UW63 502 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 RANBP10Q6VN20 620 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ATG14Q6ZNE5 492 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TTC7BQ86TV6 843 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TRIM42Q8IWZ5 723 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SLC39A11Q8N1S5 342 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 PPHLN1Q8NEY8 458 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 KIFC1Q9BW19 673 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TTLL2Q9BWV7 592 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SLC25A51Q9H1U9 297 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TRPM5Q9NZQ8 1165 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 PPARGC1AQ9UBK2 798 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 WASF2Q9Y6W5 498 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 A0A096LPK6 155 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 A0A0U1RQS6 177 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 DRGXA6NNA5 263 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 STC2O76061 302 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 EFEMP2O95967 443 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 LIMK2P53671 638 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 WDR5P61964 334 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF33AQ06730 810 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF789Q5FWF6 425 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TXNDC8Q6A555 127 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF470Q6ECI4 717 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 LINGO4Q6UY18 593 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 AGR3Q8TD06 166 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 IMP4Q96G21 291 aaKnown RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TMEM120AQ9BXJ8 343 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SEZ6LQ9BYH1 1024 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TRIM55Q9BYV6 548 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 CRISPLD2Q9H0B8 497 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SUDS3Q9H7L9 328 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF334Q9HCZ1 680 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TMCO1Q9UM00 188 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 TCAF1Q9Y4C2 921 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 MIA3Q5JRA6 1907 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 COL4A6Q14031 1691 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 NRG2O14511 850 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 PLIN3O60664 434 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 MYL2P10916 166 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 RAG1P15918 1043 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 GRIA2P42262 883 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 PTPRRQ15256 657 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 TIFABQ6ZNK6 161 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 DNAJB7Q7Z6W7 309 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 MFSD6LQ8IWD5 586 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 RNF168Q8IYW5 571 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 C2orf15Q8WU43 125 aaKnown RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 KCNK13Q9HB14 408 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 BACE2Q9Y5Z0 518 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 CBX4O00257 560 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 URODP06132 367 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 C2P06681 752 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 CNTFP26441 200 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 SLC1A2P43004 574 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 RGRP47804 291 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 ARFIP2P53365 341 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 ZXDBP98169 803 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 SLC34A1Q06495 639 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 RING1Q06587 406 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 SMARCB1Q12824 385 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF235Q14590 738 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 DUS1LQ6P1R4 473 aaKnown RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 PTAR1Q7Z6K3 402 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 ALYREFQ86V81 257 aaKnown RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 BLOC1S5Q8TDH9 187 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 NSMCE3Q96MG7 304 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 OXCT2Q9BYC2 517 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 ENTPD7Q9NQZ7 604 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 SIRPGQ9P1W8 387 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 PDP2Q9P2J9 529 aa11.78□□□□□ -0.52
SHMT2-212ENST00000554467 MTF2Q9Y483 593 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-212ENST00000554467 MAGEB16A2A368 324 aa11.77□□□□□ -0.52
SHMT2-212ENST00000554467 TEX28O15482 410 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms