RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 DLGAP2Q9P1A6 1054 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 HDAC6Q9UBN7 1215 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 STEAP1Q9UHE8 339 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 SERTAD3Q9UJW9 196 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 NDRG4Q9ULP0 352 aaKnown RBP4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TMEM5Q9Y2B1 443 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 GDAQ9Y2T3 454 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 TEX15Q9BXT5 2789 aa4.03□□□□□ -1.76
LIMA1-208ENST00000551691 NLRC5Q86WI3 1866 aa4.03□□□□□ -1.77
LIMA1-208ENST00000551691 MICAL3Q7RTP6 2002 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 PMS2P1A4D2B8 440 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 HNRNPRO43390 633 aaKnown RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 CCNDBP1O95273 360 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 BAG3O95817 575 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 KCNA2P16389 499 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 GCSHP23434 173 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 THBS4P35443 961 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 HOXD12P35452 270 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 MSX2P35548 267 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 GGT5P36269 586 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 SNAP25P60880 206 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ADAM8P78325 824 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 CSTF1Q05048 431 aaKnown RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 GOLGA8DPQ0D2H9 430 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 FOXL1Q12952 345 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 CHAF1BQ13112 559 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TDGQ13569 410 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 BOP1Q14137 746 aaKnown RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 PLCB4Q15147 1175 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 BAK1Q16611 211 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 PTCHD3Q3KNS1 767 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ZIK1Q3SY52 487 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 SPDYE7PQ495Y7 208 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 DUSP28Q4G0W2 176 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM196Q5HYL7 178 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 LIPMQ5VYY2 423 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 NAA16Q6N069 864 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ANKRD54Q6NXT1 300 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 DRICH1Q6PGQ1 229 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TMTC3Q6ZXV5 915 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 KRT77Q7Z794 578 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TAGAPQ8N103 731 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 C11orf44Q8N8P7 122 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ZMIZ2Q8NF64 920 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ETNPPLQ8TBG4 499 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ADAMTS18Q8TE60 1221 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TBC1D5Q92609 795 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 KAT2BQ92831 832 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 MAP4K1Q92918 833 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM125Q96AQ2 219 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 CALML4Q96GE6 196 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ZDHHC12Q96GR4 267 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 RSRC1Q96IZ7 334 aaKnown RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 NEK1Q96PY6 1258 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 NELL2Q99435 816 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 DPCDQ9BVM2 203 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TEX13BQ9BXU2 312 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 VCPKMTQ9H867 229 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 MMRN2Q9H8L6 949 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 GPR108Q9NPR9 543 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 SMYD2Q9NRG4 433 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 RXFP3Q9NSD7 469 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 TAS2R10Q9NYW0 307 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 NKX1-2Q9UD57 310 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 ADD3Q9UEY8 706 aaKnown RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 EIF2B4Q9UI10 523 aaKnown RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 UBE2J1Q9Y385 318 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 Q9Y3F1 56 aa4.02□□□□□ -1.77
LIMA1-208ENST00000551691 MTF2Q9Y483 593 aaPredicted RBP4.02□□□□□ -1.77
LIMA1-208ENST00000551691 FANCMQ8IYD8 2048 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FAM90A18PA6NE21 464 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FAM90A16PA6NEW6 464 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 OR2W5A6NFC9 320 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FAM90A9PA6NNJ1 464 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FAM90A5PA8MXJ8 464 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM232C9JQI7 657 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 E7ENX8 843 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 AHCYL1O43865 530 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 PLOD3O60568 738 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 HNRNPCL1O60812 293 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 WDR47O94967 919 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 RPN1P04843 607 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 APOA4P06727 396 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FAM90A15PP0C7V4 464 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 FAM90A14PP0C7W9 464 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM225BP0DP42 221 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 EEF2P13639 858 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 NFKBIAP25963 317 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 UQCRC1P31930 480 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 GRK5P34947 590 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 THPOP40225 353 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 ARL1P40616 181 aaPredicted RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 GPD2P43304 727 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 HARS2P49590 506 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 MAN2A2P49641 1150 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 ANXA11P50995 505 aaKnown RBP4.01□□□□□ -1.77
LIMA1-208ENST00000551691 DGKQP52824 942 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 HSD11B2P80365 405 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 TAP2Q03519 686 aa4.01□□□□□ -1.77
LIMA1-208ENST00000551691 GABPAQ06546 454 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms