RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 GCNT1Q02742 428 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 PTK2BQ14289 1009 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 MEA1Q16626 185 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 CARD16Q5EG05 197 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 TFAP2DQ7Z6R9 452 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 ZSCAN30Q86W11 494 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 ZNF683Q8IZ20 524 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 ARL10Q8N8L6 244 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 PCDH19Q8TAB3 1148 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 ZNF606Q8WXB4 792 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 ASB12Q8WXK4 309 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 SPATA32Q96LK8 384 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 TMEM74Q96NL1 305 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 SPON2Q9BUD6 331 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 SRRTQ9BXP5 876 aaKnown RBP10.65□□□□□ -0.7
VPS29-208ENST00000550267 ZDHHC6Q9H6R6 413 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 GEMIN8Q9NWZ8 242 aaKnown RBP10.65□□□□□ -0.7
VPS29-208ENST00000550267 MPP6Q9NZW5 540 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 FOXJ2Q9P0K8 574 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 DOLKQ9UPQ8 538 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 CNTN6Q9UQ52 1028 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 ACTL7AQ9Y615 435 aa10.65□□□□□ -0.7
VPS29-208ENST00000550267 C16orf96A6NNT2 1141 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 I6L893 689 aaPredicted RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 M0QYT0 321 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 PMM2O15305 246 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 THAP12O43422 761 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 HSF2BPO75031 334 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 GLI1P08151 1106 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 CR2P20023 1033 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 COL8A1P27658 744 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 GKP32189 559 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 EIF4A3P38919 411 aaKnown RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 SERPINH1P50454 418 aaKnown RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 MAPK10P53779 464 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 PPARDQ03181 441 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 MTA1Q13330 715 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 PNOCQ13519 176 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 IGFBP7Q16270 282 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 SKIDA1Q1XH10 827 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 EFHC1Q5JVL4 640 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 OTUD1Q5VV17 481 aaPredicted RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 MACC1Q6ZN28 852 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 FAM183BPQ6ZVS7 135 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 SETD3Q86TU7 594 aaPredicted RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 VPS36Q86VN1 386 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 WDTC1Q8N5D0 677 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 PCDH20Q8N6Y1 951 aaKnown RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 OR6K2Q8NGY2 324 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 USP7Q93009 1102 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 CENPTQ96BT3 561 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 CPXM1Q96SM3 734 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 GTPBP4Q9BZE4 634 aaKnown RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 TM6SF2Q9BZW4 377 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 CEP44Q9C0F1 390 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 TKTL2Q9H0I9 626 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 EPN3Q9H201 632 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 LRRN3Q9H3W5 708 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 MBNL1Q9NR56 388 aaKnown RBP10.64□□□□□ -0.71
VPS29-208ENST00000550267 PIGVQ9NUD9 493 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 ASNSD1Q9NWL6 643 aa10.64□□□□□ -0.71
VPS29-208ENST00000550267 KIF26BQ2KJY2 2108 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 BOD1L1Q8NFC6 3051 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 DRGXA6NNA5 263 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 C9orf172C9J069 976 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 ZMPSTE24O75844 475 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 ZNF202O95125 648 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 TFE3P19532 575 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 GNA15P30679 374 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 OR1E1P30953 314 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 YPEL5P62699 121 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 ARF5P84085 180 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 LRRC63Q05C16 580 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 CETN1Q12798 172 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 MORC3Q14149 939 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 CCDC40Q4G0X9 1142 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 COBLL1Q53SF7 1204 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 LRRC73Q5JTD7 316 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 ZNF658Q5TYW1 1059 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 RETSATQ6NUM9 610 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 DTX1Q86Y01 620 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 HID1Q8IV36 788 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 FSTL5Q8N475 847 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 Q8N9G6 341 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 ZNF564Q8TBZ8 553 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 SCG3Q8WXD2 468 aaKnown RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 JPH3Q8WXH2 748 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 TSACCQ96A04 125 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 RAB7BQ96AH8 199 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 EDEM3Q9BZQ6 932 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 ATP13A1Q9HD20 1204 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 ARHGEF38Q9NXL2 777 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 HECAQ9UBI9 543 aaPredicted RBP10.63□□□□□ -0.71
VPS29-208ENST00000550267 GPR34Q9UPC5 381 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 COL12A1Q99715 3063 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 SPTA1P02549 2419 aa10.63□□□□□ -0.71
VPS29-208ENST00000550267 PTPN13Q12923 2485 aa10.62□□□□□ -0.71
VPS29-208ENST00000550267 CLEC18AA5D8T8 446 aa10.62□□□□□ -0.71
VPS29-208ENST00000550267 P4HA2O15460 535 aa10.62□□□□□ -0.71
VPS29-208ENST00000550267 MMP20O60882 483 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms