RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 SLC12A2P55011 1212 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 IL10RBQ08334 325 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 GPR17Q13304 367 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 SERINC3Q13530 473 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 CUL3Q13618 768 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 CSHL1Q14406 222 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 RTP2Q5QGT7 225 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 PTAR1Q7Z6K3 402 aaPredicted RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ACTRT2Q8TDY3 377 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 SCG3Q8WXD2 468 aaKnown RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 HHIPL1Q96JK4 782 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 LENG8Q96PV6 779 aaPredicted RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 MRPL57Q9BQC6 102 aaKnown RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 TSEN34Q9BSV6 310 aaKnown RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 TBC1D4O60343 1298 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 PAPSS2O95340 614 aaPredicted RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ATXN1LP0C7T5 689 aaKnown RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ACADSP16219 412 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 OR1E1P30953 314 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 HK2P52789 917 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 BTKQ06187 659 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 DUSP4Q13115 394 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ARMC3Q5W041 872 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 FUT10Q6P4F1 479 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 PGM2L1Q6PCE3 622 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 LDB1Q86U70 411 aaPredicted RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 CCNYL1Q8N7R7 359 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 SPPL2BQ8TCT7 592 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 CALML6Q8TD86 181 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 GIPC2Q8TF65 315 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 SPATA17Q96L03 361 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 MYCBPQ99417 103 aaPredicted RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 ELAC1Q9H777 363 aaKnown RBP18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 KCTD3Q9Y597 815 aa18.67■□□□□ 0.58
PRPF40B-208ENST00000548436 LOC285095A0A1B0GVY8 99 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 NEMP2A6NFY4 417 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 MUSKO15146 869 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 CCNT2O60583 730 aaKnown RBP18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 PDE5AO76074 875 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 ANPEPP15144 967 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 SELPP16109 830 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 SERPINB5P36952 375 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 EPHB1P54762 984 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 NSUN2Q08J23 767 aaKnown RBP eCLIP18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 LBRQ14739 615 aaKnown RBP18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 PARP15Q460N3 678 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 TAS1R1Q7RTX1 841 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 TMEM173Q86WV6 379 aaPredicted RBP18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 CILP2Q8IUL8 1156 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 DEFB107AQ8IZN7 70 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 HDAC10Q969S8 669 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 POMKQ9H5K3 350 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 CDH22Q9UJ99 828 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 SSX2IPQ9Y2D8 614 aa18.66■□□□□ 0.58
PRPF40B-208ENST00000548436 OR51F1A6NGY5 319 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 ARVCFO00192 962 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 KCNQ1P51787 676 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 CLCN5P51795 746 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 RING1Q06587 406 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 TECRLQ5HYJ1 363 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 RNF135Q8IUD6 432 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 RAET1EQ8TD07 263 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 PDCD6IPQ8WUM4 868 aaKnown RBP18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 SEMA3CQ99985 751 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 GPAMQ9HCL2 828 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 BATF3Q9NR55 127 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 VTI1BQ9UEU0 232 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 G3BP2Q9UN86 482 aaKnown RBP18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 TMEM233B4DJY2 109 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 LDB2O43679 373 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 NPHS1O60500 1241 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 TLR5O60602 858 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 ZDHHC11BP0C7U3 371 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 PIK3R1P27986 724 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 TCTN1Q2MV58 587 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 HECTD2Q5U5R9 776 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 CFAP52Q8N1V2 620 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 EFCAB3Q8N7B9 438 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 KDM1BQ8NB78 822 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 OR6P1Q8NGX9 317 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 CNDP1Q96KN2 507 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 RTKNQ9BST9 563 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 MARCH4Q9P2E8 410 aaPredicted RBP18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 ANGPTL2Q9UKU9 493 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 PPM1HQ9ULR3 514 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 ARHGAP26Q9UNA1 814 aa18.65■□□□□ 0.58
PRPF40B-208ENST00000548436 SCN5AQ14524 2016 aa18.64■□□□□ 0.58
PRPF40B-208ENST00000548436 SLC7A4O43246 635 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 LUC7L3O95232 432 aaKnown RBP18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 TACR2P21452 398 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 KCNA5P22460 613 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 ATP5F1P24539 256 aaPredicted RBP18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 DNAJB13P59910 316 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 ASPHQ12797 758 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 PDCD2Q16342 344 aaPredicted RBP18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 FAM83EQ2M2I3 478 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 PPM1LQ5SGD2 360 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 TMCO4Q5TGY1 634 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 TMEM198Q66K66 360 aa18.64■□□□□ 0.57
PRPF40B-208ENST00000548436 TRIM67Q6ZTA4 783 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms