RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ZNF302Q9NR11 478 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 IARS2Q9NSE4 1012 aaKnown RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 TELO2Q9Y4R8 837 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 AP4S1Q9Y587 144 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ACTL7BQ9Y614 415 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ANK1P16157 1881 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 PDCD11Q14690 1871 aaKnown RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 NLRC5Q86WI3 1866 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 A0A096LPK6 155 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ANKRD34BA5PLL1 514 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 FAM149AA5PLN7 773 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 H3BSA7 217 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 M0R082 166 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 TPP1O14773 563 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 MAGEB3O15480 346 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 FKTNO75072 461 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 SRP72O76094 671 aaKnown RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 PIGNO95427 931 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 HMGCRP04035 888 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 CAPNS1P04632 268 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 SERPINE1P05121 402 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 JMJD7P0C870 316 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 CCDC130P13994 396 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 KCNA2P16389 499 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 FDFT1P37268 417 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 GRIA3P42263 894 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 TMEM62Q0P6H9 643 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 TRIM25Q14258 630 aaKnown RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 PLCL1Q15111 1095 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 MTX3Q5HYI7 312 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 C6orf183Q5T699 404 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 FBXO46Q6PJ61 603 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 MAMDC4Q6UXC1 1216 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 FAM160B2Q86V87 743 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 PQLC1Q8N2U9 271 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ZCCHC7Q8N3Z6 543 aaKnown RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF417Q8TAU3 575 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 LPAR1Q92633 364 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 TUBGCP3Q96CW5 907 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 DCUN1D1Q96GG9 259 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 SERAC1Q96JX3 654 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 SLITRK1Q96PX8 696 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF587Q96SQ5 575 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 ACSS3Q9H6R3 686 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 WDR41Q9HAD4 459 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 HPS4Q9NQG7 708 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-203ENST00000547825 SFMBT1Q9UHJ3 866 aa5.54□□□□□ -1.52
LIMA1-203ENST00000547825 TRIP11Q15643 1979 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SDR42E2A6NKP2 422 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 RGS5O15539 181 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 EXTL3O43909 919 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 UGT1A9O60656 530 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 BAIAP3O94812 1187 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ITGB3P05106 788 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CYP1A2P05177 515 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 COL6A1P12109 1028 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 COX4I1P13073 169 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TCF4P15884 667 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 GPD1P21695 349 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 HMOX2P30519 316 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 PTPN7P35236 360 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 RALGDSQ12967 914 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TTLL4Q14679 1199 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NR1D2Q14995 579 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SGO1Q5FBB7 561 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF618Q5T7W0 954 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 FAM160B1Q5W0V3 765 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 C10orf107Q8IVU9 208 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ALLCQ8N6M5 410 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MAGEE2Q8TD90 523 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 FAM172AQ8WUF8 416 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ABHD8Q96I13 439 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NPAS2Q99743 824 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ROGDIQ9GZN7 287 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 UGT1A7Q9HAW7 530 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 UGT1A10Q9HAW8 530 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 UGT1A8Q9HAW9 530 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ZC4H2Q9NQZ6 224 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 EURLQ9NYK6 297 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 UBAP1Q9NZ09 502 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TMCO1Q9UM00 188 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MAPRE3Q9UPY8 281 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MAP1BP46821 2468 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ADGRA3Q8IWK6 1321 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CNTNAP2Q9UHC6 1331 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CYP3A7-CYP3A51PA0A087WV96 503 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NCF1BA6NI72 391 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NCF1CA8MVU1 366 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 RGS13O14921 159 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TMPRSS2O15393 492 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ZC3H11AO75152 810 aaKnown RBP eCLIP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 WISP1O95388 367 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CHEK2O96017 543 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 APOA1P02647 267 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 PRKCBP05771 671 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CD48P09326 243 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 T-ENOLP0DO92 83 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 PCNAP12004 261 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms