RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 GNA12Q03113 381 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 IRF4Q15306 451 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 KLHL40Q2TBA0 621 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 GJB7Q6PEY0 223 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 BORAQ6PGQ7 559 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 TMPRSS9Q7Z410 1059 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 TTC7BQ86TV6 843 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 GKN2Q86XP6 184 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 DRC7Q8IY82 874 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 ZNF397Q8NF99 534 aaPredicted RBP12.9□□□□□ -0.34
SCAF11-208ENST00000546534 GPR156Q8NFN8 814 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 OR6C4Q8NGE1 309 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 NT5C3BQ969T7 300 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 CCDC34Q96HJ3 373 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 KLHL32Q96NJ5 620 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 CMKLR1Q99788 373 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 C1QTNF7Q9BXJ2 289 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 RRN3Q9NYV6 651 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 APPL1Q9UKG1 709 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 RNF215Q9Y6U7 377 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 BSNQ9UPA5 3926 aa12.9□□□□□ -0.34
SCAF11-208ENST00000546534 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PSMA7O14818 248 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 CD82P27701 267 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 ACVRL1P37023 503 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 USP8P40818 1118 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 CASRP41180 1078 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PEX5P50542 639 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 POLE2P56282 527 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 RNASE9P60153 205 aaKnown RBP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 SRP54P61011 504 aaKnown RBP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 DEUP1Q05D60 604 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 KCNAB2Q13303 367 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 MYLK3Q32MK0 819 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PTPN20Q4JDL3 420 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 C4orf17Q53FE4 359 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PHF19Q5T6S3 580 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 KCTD16Q68DU8 428 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 ENPP7Q6UWV6 458 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 SPRED1Q7Z699 444 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 SLITRK4Q8IW52 837 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 SFTPA2Q8IWL1 248 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 TRIM59Q8IWR1 403 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 C1orf131Q8NDD1 294 aaKnown RBP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 OR2AP1Q8NGE2 309 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 SPATA20Q8TB22 786 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 CXorf40AQ8TE69 158 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PGAP3Q96FM1 320 aaPredicted RBP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PSMG3-AS1Q96PY0 264 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 TBCBQ99426 244 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 WRAP53Q9BUR4 548 aaKnown RBP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 ZYG11BQ9C0D3 744 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.89□□□□□ -0.35
SCAF11-208ENST00000546534 PCDHGC3Q9UN70 934 aa12.89□□□□□ -0.35
SCAF11-208ENST00000546534 USP9YO00507 2555 aaPredicted RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 TMEM110-MUSTN1A8MSY1 372 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 POP4O95707 220 aaKnown RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 GSRP00390 522 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 F9P00740 461 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 CCL4P13236 92 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 CD46P15529 392 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 GLB1P16278 677 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 SNRPD1P62314 119 aaKnown RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 SERINC3Q13530 473 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 C16orf72Q14CZ0 275 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 LRRC14Q15048 493 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 POLD3Q15054 466 aaPredicted RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 WSCD2Q2TBF2 565 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 CERCAMQ5T4B2 595 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 ATXN7L2Q5T6C5 722 aaPredicted RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 ACBD5Q5T8D3 534 aaPredicted RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 ISM2Q6H9L7 571 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 TTI2Q6NXR4 508 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 OGFOD3Q6PK18 319 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 GDPD4Q6W3E5 623 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 LEKR1Q6ZMV7 388 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 ARHGEF2Q92974 986 aaKnown RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 NKD1Q969G9 470 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 DHTKD1Q96HY7 919 aaPredicted RBP12.88□□□□□ -0.35
SCAF11-208ENST00000546534 OSBPL1AQ9BXW6 950 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 B3GNT4Q9C0J1 378 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 SEMA6CQ9H3T2 930 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 SYNCQ9H7C4 482 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 ANAPC2Q9UJX6 822 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 STAP1Q9ULZ2 295 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 COQ6Q9Y2Z9 468 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 ZDHHC9Q9Y397 364 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 OR1A2Q9Y585 309 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 PAXBP1Q9Y5B6 917 aa12.88□□□□□ -0.35
SCAF11-208ENST00000546534 NBASA2RRP1 2371 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 RELNP78509 3460 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 CXorf51AA0A1B0GTR3 108 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 STMND1H3BQB6 276 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 SMC2O95347 1197 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 TIMP2P16035 220 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 PNLIPP16233 465 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 HTR1BP28222 390 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 SNX16P57768 344 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 STIM1Q13586 685 aa12.87□□□□□ -0.35
SCAF11-208ENST00000546534 INPP5AQ14642 412 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms