RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ITGB7	P26010	798 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	FNTB	P49356	437 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	NEK3	P51956	506 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAM193A	P78312	1265 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	CNTN1	Q12860	1018 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	USP39	Q53GS9	565 aa	Known RBP	10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	C8orf74	Q6P047	294 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	ERAP2	Q6P179	960 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	BRAT1	Q6PJG6	821 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	PPP1R21	Q6ZMI0	780 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLC25A41	Q8N5S1	370 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	PDCD7	Q8N8D1	485 aa	Known RBP	10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	OR14C36	Q8NHC7	312 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	RLN3	Q8WXF3	142 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	NSMCE3	Q96MG7	304 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	APOL2	Q9BQE5	337 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	TRIM51	Q9BSJ1	452 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	MLPH	Q9BV36	600 aa	Predicted RBP	10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	TDRD1	Q9BXT4	1180 aa	Known RBP	10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	NEUROG2	Q9H2A3	272 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	DKK3	Q9UBP4	350 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	EBF1	Q9UH73	591 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	CYP8B1	Q9UNU6	501 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	INVS	Q9Y283	1065 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	UTP11	Q9Y3A2	253 aa	Known RBP	10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	VCAN	P13611	3396 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	NUP205	Q92621	2012 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	COL4A2	P08572	1712 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	PRR23A	A6NEV1	266 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	EFCAB8	A8MWE9	144 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	UPK3BL1	B0FP48	263 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	UPK3BL2	E5RIL1	263 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	TRAFD1	O14545	582 aa	Predicted RBP	10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	HTRA2	O43464	458 aa	Predicted RBP	10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCDH8	O95206	1070 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PAPSS2	O95340	614 aa	Predicted RBP	10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	NDST3	O95803	873 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	AGT	P01019	485 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PDHA1	P08559	390 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	CTPS1	P17812	591 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	OXTR	P30559	389 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	P2RY2	P41231	377 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	TPMT	P51580	245 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	DMWD	Q09019	674 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PTK6	Q13882	451 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	GALNT3	Q14435	633 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	IHH	Q14623	411 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLC14A2	Q15849	920 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	UGP2	Q16851	508 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	LRRC73	Q5JTD7	316 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	KDELC1	Q6UW63	502 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	USP30	Q70CQ3	517 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PARS2	Q7L3T8	475 aa	Known RBP	10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	KBTBD6	Q86V97	674 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	RASSF3	Q86WH2	238 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	MMGT1	Q8N4V1	131 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	AADAT	Q8N5Z0	425 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	DNAAF3	Q8N9W5	541 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	HCAR2	Q8TDS4	363 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	SLCO2A1	Q92959	643 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	FEM1C	Q96JP0	617 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	SPACA7	Q96KW9	195 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	MRGPRX2	Q96LB1	330 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBL1Y	Q9BQ87	522 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	HINFP	Q9BQA5	517 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	LRRC1	Q9BTT6	524 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	HDAC8	Q9BY41	377 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	BTBD1	Q9H0C5	482 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	LRRC40	Q9H9A6	602 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	L2HGDH	Q9H9P8	463 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	ITM2C	Q9NQX7	267 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PRMT8	Q9NR22	394 aa	Predicted RBP	10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	FBXO4	Q9UKT5	387 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	PHTF1	Q9UMS5	762 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	SNX24	Q9Y343	169 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	DOCK4	Q8N1I0	1966 aa		10.23	□□□□□ -0.77
CPSF7-221	ENST00000543545	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3D	A0A087WVF3	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3I	A0A087WXS9	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3E	A0A087X179	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3K	A0A087X1G2	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3F	A6NER0	549 aa	Predicted RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ERI2	A8K979	691 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545		A8MX80	341 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3L	B9A6J9	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	NDUFS2	O75306	463 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	USP12	O75317	370 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	AP2A1	O95782	977 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	EPO	P01588	193 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	TBC1D3H	P0C7X1	549 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	CYP2A6	P11509	494 aa	Predicted RBP	10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ADRB3	P13945	408 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ITIH2	P19823	946 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	CD6	P30203	668 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	HOXA6	P31267	233 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	DRD3	P35462	400 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	ABL2	P42684	1182 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	SUOX	P51687	545 aa		10.22	□□□□□ -0.77
CPSF7-221	ENST00000543545	RPL26	P61254	145 aa	Known RBP	10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms