RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 FAM72BQ86X60 149 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 CXorf40AQ8TE69 158 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 WRAP53Q9BUR4 548 aaKnown RBP18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 STRADBQ9C0K7 418 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 LRRN3Q9H3W5 708 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 TMEM248Q9NWD8 314 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 OR12D3Q9UGF7 316 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 GPR34Q9UPC5 381 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 DOLKQ9UPQ8 538 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 COQ6Q9Y2Z9 468 aa18.02■□□□□ 0.48
CLSTN3-214ENST00000542663 FLNCQ14315 2725 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 TMX2-CTNND1H3BSU7 103 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 SUV39H1O43463 412 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 ALPIP09923 528 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 FAM87AP0C7U9 286 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 CYP11B1P15538 503 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 TIMP2P16035 220 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 WT1P19544 449 aaPredicted RBP18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 ITIH1P19827 911 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 MAPKAPK2P49137 400 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 PEX5P50542 639 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 ATP11AP98196 1134 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 ARCQ7LC44 396 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 EMC1Q8N766 993 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 NETO2Q8NC67 525 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 SCG3Q8WXD2 468 aaKnown RBP18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 ARHGAP9Q9BRR9 750 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 C1QTNF7Q9BXJ2 289 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 MAGEH1Q9H213 219 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 PISDQ9UG56 409 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 RWDD2AQ9UIY3 292 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 PCDHGA4Q9Y5G9 962 aa18.01■□□□□ 0.47
CLSTN3-214ENST00000542663 PRAMEF33A0A0G2JMD5 474 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 PRAMEF10O60809 474 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 TMCC1O94876 653 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 JMJD7P0C870 316 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 CTSEP14091 401 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 RHOQP17081 205 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 ADRA1BP35368 520 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 ETV5P41161 510 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 BPIFB4P59827 614 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 ZFP36L1Q07352 338 aaKnown RBP18■□□□□ 0.47
CLSTN3-214ENST00000542663 WSCD2Q2TBF2 565 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 TMEM52BQ4KMG9 183 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 TAF3Q5VWG9 929 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 RWDD4Q6NW29 188 aaKnown RBP18■□□□□ 0.47
CLSTN3-214ENST00000542663 ATG14Q6ZNE5 492 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 RD3Q7Z3Z2 195 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 VASH2Q86V25 355 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 GPR156Q8NFN8 814 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 TMEM74Q96NL1 305 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 SEMA3CQ99985 751 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 TTYH3Q9C0H2 523 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 PDCL3Q9H2J4 239 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 DKK3Q9UBP4 350 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 HPCAL4Q9UM19 191 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 LOXL2Q9Y4K0 774 aa18■□□□□ 0.47
CLSTN3-214ENST00000542663 AGRPO00253 132 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 KDELR3O43731 214 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 LRIG2O94898 1065 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 RASGRP1O95267 797 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 SRP54P61011 504 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 NFATC4Q14934 902 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 LRRC14Q15048 493 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 CDO1Q16878 200 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 C15orf59Q2T9L4 293 aaPredicted RBP17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 COLEC12Q5KU26 742 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 ENPP7Q6UWV6 458 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 TMPRSS9Q7Z410 1059 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 ZFAND4Q86XD8 727 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 GKN2Q86XP6 184 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 CCNJLQ8IV13 435 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 SFTPA2Q8IWL1 248 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 HTR3CQ8WXA8 447 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 CPA5Q8WXQ8 436 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 PDXPQ96GD0 296 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 GDAP1L1Q96MZ0 367 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 APOOQ9BUR5 198 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 KLC2Q9H0B6 622 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 RETREG1Q9H6L5 497 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 NOL6Q9H6R4 1146 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 METTL5Q9NRN9 209 aaKnown RBP17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 FOXJ2Q9P0K8 574 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 MFHAS1Q9Y4C4 1052 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 OR1A2Q9Y585 309 aa17.99■□□□□ 0.47
CLSTN3-214ENST00000542663 TMEM110-MUSTN1A8MSY1 372 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 INSIG1O15503 277 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 RAMP2O60895 175 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 NOMO3P69849 1222 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 CYP4F2P78329 520 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 INPP5AQ14642 412 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 TBR1Q16650 682 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 MANEAQ5SRI9 462 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 NOP9Q86U38 636 aaKnown RBP17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 DTX1Q86Y01 620 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 Q8N9G6 341 aaPredicted RBP17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 OR6C4Q8NGE1 309 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 RBM15Q96T37 977 aaKnown RBP eCLIP17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 APPL1Q9UKG1 709 aa17.98■□□□□ 0.47
CLSTN3-214ENST00000542663 FHOD1Q9Y613 1164 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms