RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ZSCAN5DPP0CG00 497 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 GOLGA6DP0CG33 693 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 OXTRP30559 389 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 FDFT1P37268 417 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 P2RY2P41231 377 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 FNTBP49356 437 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 NEK3P51956 506 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 USP39Q53GS9 565 aaKnown RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 FBXL19Q6PCT2 694 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 PARS2Q7L3T8 475 aaKnown RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 TTC7BQ86TV6 843 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 WDR5BQ86VZ2 330 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 FAM131CQ96AQ9 280 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 KRT12Q99456 494 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 GORASP1Q9BQQ3 440 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 NEUROG2Q9H2A3 272 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 GOLGA6AQ9NYA3 693 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 NEU2Q9Y3R4 380 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 PLK4O00444 970 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 SLC7A4O43246 635 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 ADRB3P13945 408 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 PTGIRP43119 386 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 SUOXP51687 545 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 DR1Q01658 176 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 NHLH1Q02575 133 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 CDK18Q07002 472 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 C2orf54Q08AI8 447 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 DHX34Q14147 1143 aaKnown RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 PPP1R7Q15435 360 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 TRIP13Q15645 432 aaPredicted RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 UGP2Q16851 508 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 PIP5KL1Q5T9C9 394 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 KDELC1Q6UW63 502 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 SYDE1Q6ZW31 735 aaPredicted RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 TAB3Q8N5C8 712 aaPredicted RBP17.26■□□□□ 0.35
LIG1-204ENST00000542460 PRSS33Q8NF86 280 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 NELL1Q92832 810 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 RAB7BQ96AH8 199 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 IFT43Q96FT9 208 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 ADGRE3Q9BY15 652 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 RAB6BQ9NRW1 208 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 SERGEFQ9UGK8 458 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 CYP8B1Q9UNU6 501 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 CHKBQ9Y259 395 aa17.26■□□□□ 0.35
LIG1-204ENST00000542460 PSMD3O43242 534 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 PRLP01236 227 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 EPOP01588 193 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 PDHA1P08559 390 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 SP9P0CG40 484 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 TIMP2P16035 220 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 XPAP23025 273 aaPredicted RBP17.25■□□□□ 0.35
LIG1-204ENST00000542460 TNNT3P45378 269 aaPredicted RBP17.25■□□□□ 0.35
LIG1-204ENST00000542460 WNT3AP56704 352 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 RPL26P61254 145 aaKnown RBP17.25■□□□□ 0.35
LIG1-204ENST00000542460 PCSK7Q16549 785 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 MAP7D1Q3KQU3 841 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 AGBL4Q5VU57 503 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 FAM124AQ86V42 546 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 ZSWIM9Q86XI8 627 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 KLHDC8BQ8IXV7 354 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 NDUFAF2Q8N183 169 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 CEP112Q8N8E3 955 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 CCHCR1Q8TD31 782 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 RLN3Q8WXF3 142 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 LRRC45Q96CN5 670 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 FEM1CQ96JP0 617 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 SPACA7Q96KW9 195 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 MRGPRX2Q96LB1 330 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 PRRX2Q99811 253 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 MLPHQ9BV36 600 aaPredicted RBP17.25■□□□□ 0.35
LIG1-204ENST00000542460 BTBD1Q9H0C5 482 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 ETNK1Q9HBU6 452 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 SGK2Q9HBY8 427 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 CD93Q9NPY3 652 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 PHTF1Q9UMS5 762 aa17.25■□□□□ 0.35
LIG1-204ENST00000542460 RPL26L1Q9UNX3 145 aaKnown RBP17.25■□□□□ 0.35
LIG1-204ENST00000542460 LOC285095A0A1B0GVY8 99 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 CTAGE15A4D2H0 777 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 UPK3BL1B0FP48 263 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 UPK3BL2E5RIL1 263 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 E7EVH7 732 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 CPP00450 1065 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 CTAGE8P0CG41 777 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 NFKBIAP25963 317 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 EPHB1P54762 984 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 GPS1Q13098 491 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 SEMA5AQ13591 1074 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 FAXCQ5TGI0 409 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 CCDC70Q6NSX1 233 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 KDELC2Q7Z4H8 507 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 MAATS1Q7Z4T9 603 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 CTAGE6Q86UF2 777 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 CTAGE4Q8IX94 777 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 IPMKQ8NFU5 416 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 PIH1D2Q8WWB5 315 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 TRIB3Q96RU7 358 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 FSD1LQ9BXM9 530 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 ZSCAN32Q9NX65 697 aa17.24■□□□□ 0.35
LIG1-204ENST00000542460 WSB2Q9NYS7 404 aaPredicted RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms