RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CATSPERBQ9H7T0 1116 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 KRCC1Q9NPI7 259 aaPredicted RBP3.41□□□□□ -1.86
USP28-210ENST00000542033 ATP8A2Q9NTI2 1148 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 PPP1R14DQ9NXH3 145 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 NKIRAS2Q9NYR9 191 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 NCKIPSDQ9NZQ3 722 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 HDAC6Q9UBN7 1215 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 SMC3Q9UQE7 1217 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 KIF3AQ9Y496 699 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 CLDN16Q9Y5I7 305 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 RAD54L2Q9Y4B4 1467 aa3.41□□□□□ -1.86
USP28-210ENST00000542033 B4DLN1 442 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 FAM157AC9JC47 383 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TULP2O00295 520 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 KCNAB3O43448 404 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 SLC25A17O43808 307 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 CEP104O60308 925 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 PLOD3O60568 738 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 IPO7O95373 1038 aaKnown RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 NTN1O95631 604 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TOMM40O96008 361 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 F9P00740 461 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 ADAP00813 363 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 ACADMP11310 421 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 ITGB6P18564 788 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 RRM1P23921 792 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 ARL1P40616 181 aaPredicted RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 ARSFP54793 590 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 CDH12P55289 794 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 FOXG1P55316 489 aaPredicted RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 RPP30P78346 268 aaKnown RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 TDGQ13569 410 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 CUL4AQ13619 759 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 PKP1Q13835 747 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 EEA1Q15075 1411 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 ME3Q16798 604 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 OTUD1Q5VV17 481 aaPredicted RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 TBC1D9BQ66K14 1250 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TMEM71Q6P5X7 295 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 PDXDC1Q6P996 788 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 INO80CQ6PI98 192 aaPredicted RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 CTU1Q7Z7A3 348 aaKnown RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 CPLX4Q7Z7G2 160 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 GALNT5Q7Z7M9 940 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TRIM74Q86UV6 250 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TRIM73Q86UV7 250 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 CPXM2Q8N436 756 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TNIP2Q8NFZ5 429 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 RASSF8Q8NHQ8 419 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 SLC35F5Q8WV83 523 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 RUFY2Q8WXA3 655 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 FRAT1Q92837 279 aaPredicted RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 GFM1Q96RP9 751 aaKnown RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 EYA3Q99504 573 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 SF3B5Q9BWJ5 86 aaKnown RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 LHPPQ9H008 270 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 INTS2Q9H0H0 1204 aaKnown RBP3.4□□□□□ -1.87
USP28-210ENST00000542033 KLHL31Q9H511 634 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 SLC32A1Q9H598 525 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 DIAPH3Q9NSV4 1193 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 ANKEF1Q9NU02 776 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 TAS2R10Q9NYW0 307 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 IL1RAPL1Q9NZN1 696 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 VPS28Q9UK41 221 aa3.4□□□□□ -1.87
USP28-210ENST00000542033 GOLGA6L10A0A0M3HER8 536 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 C17orf113A0A1B0GUU1 675 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ARHGAP10A1A4S6 786 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 MS4A18H0YCH9 400 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 GTPBP1O00178 669 aaKnown RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 MPHOSPH10O00566 681 aaKnown RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 TNFRSF13BO14836 293 aaPredicted RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 IKBKBO14920 756 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 IPO8O15397 1037 aaKnown RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 DOK2O60496 412 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 PTP4A3O75365 173 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 CLEC3BP05452 202 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ARSBP15848 533 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 HOXD13P35453 343 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 COPB2P35606 906 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 KRT20P35900 424 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ARL3P36405 182 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 PPP3CCP48454 512 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 PGGT1BP53609 377 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 CDH15P55291 814 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ZP1P60852 638 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 YWHAZP63104 245 aaKnown RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 MAMLD1Q13495 774 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 PRICKLE4Q2TBC4 344 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 CFAP58Q5T655 872 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 FAM69AQ5T7M9 428 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 DCAF12L2Q5VW00 463 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ZNF549Q6P9A3 640 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ATF7IPQ6VMQ6 1270 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ZNF517Q6ZMY9 492 aaPredicted RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 H1FNTQ75WM6 255 aaPredicted RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 PRSS45Q7RTY3 260 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 DIS3L2Q8IYB7 885 aaKnown RBP3.39□□□□□ -1.87
USP28-210ENST00000542033 CADM3Q8N126 398 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 ADSSL1Q8N142 457 aa3.39□□□□□ -1.87
USP28-210ENST00000542033 LSMEM1Q8N8F7 131 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms