RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SEC23AQ15436 765 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 ALX1Q15699 326 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 TYSND1Q2T9J0 566 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 C10orf62Q5T681 223 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-214ENST00000540539 C12orf60Q5U649 245 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 CACHD1Q5VU97 1274 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 HMBOX1Q6NT76 420 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 TATDN1Q6P1N9 297 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF773Q6PK81 442 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 DPY19L3Q6ZPD9 716 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 NOXA1Q86UR1 476 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 AMIGO1Q86WK6 493 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 UBR7Q8N806 425 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 GLIS1Q8NBF1 620 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 ZBTB44Q8NCP5 570 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 BTN2A3PQ96KV6 586 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 MMP19Q99542 508 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 CDADC1Q9BWV3 514 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 NOL11Q9H8H0 719 aaKnown RBP9.54□□□□□ -0.88
CLIP1-214ENST00000540539 RAVER2Q9HCJ3 691 aaKnown RBP9.54□□□□□ -0.88
CLIP1-214ENST00000540539 GABBR1Q9UBS5 961 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 TEKT2Q9UIF3 430 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 KLF2Q9Y5W3 355 aaPredicted RBP9.54□□□□□ -0.88
CLIP1-214ENST00000540539 RAD54BQ9Y620 910 aa9.54□□□□□ -0.88
CLIP1-214ENST00000540539 TNKSO95271 1327 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 TRIM49D1C9J1S8 452 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 E7ENX8 843 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 H3BMM5 538 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 FZD9O00144 591 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 COPEO14579 308 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 AP3D1O14617 1153 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ST8SIA5O15466 376 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ZBTB14O43829 449 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 SYNCRIPO60506 623 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 SNAP29O95721 258 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 FTLP02792 175 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 PGRP06401 933 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 RBP1P09455 135 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 AXLP30530 894 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 GP5P40197 560 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ACTR2P61160 394 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 RPS6P62753 249 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 INCA1Q0VD86 236 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 GRB10Q13322 594 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 TCEAL1Q15170 157 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 Q3ZCU0 254 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 DCAF17Q5H9S7 520 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 NXNL2Q5VZ03 156 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 CIAPIN1Q6FI81 312 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 RSBN1LQ6PCB5 846 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 SYCE2Q6PIF2 218 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ABRAXAS1Q6UWZ7 409 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 SLC9A9Q8IVB4 645 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 BLIDQ8IZY5 108 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 MFSD2AQ8NA29 543 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 GLB1L3Q8NCI6 653 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 RHOXF1Q8NHV9 184 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 SPATA18Q8TC71 538 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 CIDECQ96AQ7 238 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 NRBF2Q96F24 287 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 RPRD1AQ96P16 312 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 TWNKQ96RR1 684 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 STRBPQ96SI9 672 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 TTPALQ9BTX7 342 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ANO3Q9BYT9 981 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 NGRNQ9NPE2 291 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 SYBUQ9NX95 663 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 VPS28Q9UK41 221 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 KCNE2Q9Y6J6 123 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 MN1Q10571 1320 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 TANC1Q9C0D5 1861 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 CYP2C8P10632 490 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 IL10P22301 178 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ME2P23368 584 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 DPP6P42658 865 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 IDH3AP50213 366 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 EIF6P56537 245 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 MERTKQ12866 999 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 GALEQ14376 348 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 GRM7Q14831 915 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 CTF1Q16619 201 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 IFIT1BQ5T764 474 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 GDPD3Q7L5L3 318 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 VN1R5Q7Z5H4 357 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ZC3H3Q8IXZ2 948 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 UBQLNLQ8IYU4 475 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 MICU2Q8IYU8 434 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 IFNL3Q8IZI9 196 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 DAGLBQ8NCG7 672 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 FAM156AQ8NDB6 213 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 LARP4BQ92615 738 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 DHX38Q92620 1227 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 FOXJ1Q92949 421 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 BIRC7Q96CA5 298 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF578Q96N58 590 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 KCTD14Q9BQ13 255 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 TSEN34Q9BSV6 310 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 KIFC1Q9BW19 673 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 LRRC40Q9H9A6 602 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 ZNF556Q9HAH1 456 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms